[API] list datasets #2129
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| name: Build PR container | |
| on: | |
| pull_request: | |
| paths-ignore: | |
| - ".github/integration/**" | |
| - ".github/workflows/**" | |
| - ".gitignore" | |
| - "**/*.md" | |
| - ".github/dependabot.yaml" | |
| - "charts/**" | |
| - "Makefile" | |
| - "sda-admin/**" | |
| env: | |
| PR_NUMBER: ${{ github.event.number }} | |
| jobs: | |
| build_go_images: | |
| name: Build PR image (golang) | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: read | |
| packages: write | |
| security-events: write | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Log in to the Github Container registry | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Build container for sda-download | |
| uses: docker/build-push-action@v6 | |
| with: | |
| context: ./sda-download | |
| push: true | |
| tags: | | |
| ghcr.io/${{ github.repository }}:sha-${{ github.sha }}-download | |
| ghcr.io/${{ github.repository }}:PR${{ github.event.number }}-download | |
| labels: | | |
| org.opencontainers.image.source=${{ github.event.repository.clone_url }} | |
| org.opencontainers.image.created=$(date -u +'%Y-%m-%dT%H:%M:%SZ') | |
| org.opencontainers.image.revision=${{ github.sha }} | |
| - name: Build container for sensitive-data-archive | |
| uses: docker/build-push-action@v6 | |
| with: | |
| context: ./sda | |
| push: true | |
| tags: | | |
| ghcr.io/${{ github.repository }}:sha-${{ github.sha }} | |
| ghcr.io/${{ github.repository }}:PR${{ github.event.number }} | |
| labels: | | |
| org.opencontainers.image.source=${{ github.event.repository.clone_url }} | |
| org.opencontainers.image.created=$(date -u +'%Y-%m-%dT%H:%M:%SZ') | |
| org.opencontainers.image.revision=${{ github.sha }} | |
| build_server_images: | |
| name: Build PR image (servers) | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: read | |
| packages: write | |
| security-events: write | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Log in to the Github Container registry | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Build container for postgres | |
| uses: docker/build-push-action@v6 | |
| with: | |
| context: ./postgresql | |
| push: true | |
| tags: | | |
| ghcr.io/${{ github.repository }}:sha-${{ github.sha }}-postgres | |
| ghcr.io/${{ github.repository }}:PR${{ github.event.number }}-postgres | |
| labels: | | |
| org.opencontainers.image.source=${{ github.event.repository.clone_url }} | |
| org.opencontainers.image.created=$(date -u +'%Y-%m-%dT%H:%M:%SZ') | |
| org.opencontainers.image.revision=${{ github.sha }} | |
| - name: Build container for rabbitmq | |
| uses: docker/build-push-action@v6 | |
| with: | |
| context: ./rabbitmq | |
| push: true | |
| tags: | | |
| ghcr.io/${{ github.repository }}:sha-${{ github.sha }}-rabbitmq | |
| ghcr.io/${{ github.repository }}:PR${{ github.event.number }}-rabbitmq | |
| labels: | | |
| org.opencontainers.image.source=${{ github.event.repository.clone_url }} | |
| org.opencontainers.image.created=$(date -u +'%Y-%m-%dT%H:%M:%SZ') | |
| org.opencontainers.image.revision=${{ github.sha }} | |
| - name: Run Trivy vulnerability scanner on postgres | |
| uses: aquasecurity/[email protected] | |
| env: | |
| TRIVY_SKIP_DB_UPDATE: true | |
| TRIVY_SKIP_JAVA_DB_UPDATE: true | |
| with: | |
| image-ref: ghcr.io/${{ github.repository }}:sha-${{ github.sha }}-postgres | |
| format: "sarif" | |
| hide-progress: true | |
| ignore-unfixed: true | |
| output: 'postgres-results.sarif' | |
| severity: "CRITICAL,HIGH" | |
| - name: Upload Trivy scan results to GitHub Security tab | |
| uses: github/codeql-action/upload-sarif@v3 | |
| with: | |
| sarif_file: 'postgres-results.sarif' | |
| category: postgres | |
| - name: Run Trivy vulnerability scanner on rabbitmq | |
| uses: aquasecurity/[email protected] | |
| env: | |
| TRIVY_SKIP_DB_UPDATE: true | |
| TRIVY_SKIP_JAVA_DB_UPDATE: true | |
| with: | |
| image-ref: ghcr.io/${{ github.repository }}:sha-${{ github.sha }}-rabbitmq | |
| format: "sarif" | |
| hide-progress: true | |
| ignore-unfixed: true | |
| output: 'rabbitmq-results.sarif' | |
| severity: "CRITICAL,HIGH" | |
| - name: Upload Trivy scan results to GitHub Security tab | |
| uses: github/codeql-action/upload-sarif@v3 | |
| with: | |
| sarif_file: 'rabbitmq-results.sarif' | |
| category: rabbitmq | |
| build_java_images: | |
| name: Build PR image (java) | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: read | |
| packages: write | |
| security-events: write | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Log in to the Github Container registry | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Build container for sda-sftp-inbox | |
| uses: docker/build-push-action@v6 | |
| with: | |
| context: ./sda-sftp-inbox | |
| push: true | |
| tags: | | |
| ghcr.io/${{ github.repository }}:sha-${{ github.sha }}-sftp-inbox | |
| ghcr.io/${{ github.repository }}:PR${{ github.event.number }}-sftp-inbox | |
| labels: | | |
| org.opencontainers.image.source=${{ github.event.repository.clone_url }} | |
| org.opencontainers.image.created=$(date -u +'%Y-%m-%dT%H:%M:%SZ') | |
| org.opencontainers.image.revision=${{ github.sha }} | |
| - name: Run Trivy vulnerability scanner on sftp-inbox | |
| uses: aquasecurity/[email protected] | |
| env: | |
| TRIVY_SKIP_DB_UPDATE: true | |
| TRIVY_SKIP_JAVA_DB_UPDATE: true | |
| with: | |
| image-ref: ghcr.io/${{ github.repository }}:sha-${{ github.sha }}-sftp-inbox | |
| format: "sarif" | |
| hide-progress: true | |
| ignore-unfixed: true | |
| output: 'inbox-results.sarif' | |
| severity: "CRITICAL,HIGH" | |
| - name: Upload Trivy scan results to GitHub Security tab | |
| uses: github/codeql-action/upload-sarif@v3 | |
| with: | |
| sarif_file: 'inbox-results.sarif' | |
| category: sftp-inbox | |
| rabbitmq: | |
| needs: | |
| - build_go_images | |
| - build_server_images | |
| name: rabbitmq-federation-test | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out code | |
| uses: actions/checkout@v4 | |
| - name: Test rabbitmq federation | |
| run: docker compose -f .github/integration/rabbitmq-federation.yml run federation_test | |
| postgres: | |
| needs: | |
| - build_server_images | |
| name: postgres-test-suite | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out code | |
| uses: actions/checkout@v4 | |
| - name: Test postgres | |
| run: docker compose -f .github/integration/postgres.yml run tests | |
| sda: | |
| needs: | |
| - build_go_images | |
| - build_server_images | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| storage: ["posix", "s3"] | |
| steps: | |
| - name: Check out code | |
| uses: actions/checkout@v4 | |
| - name: Test sensitive-data-archive | |
| run: docker compose -f .github/integration/sda-${{matrix.storage}}-integration.yml run integration_test | |
| chart: | |
| needs: | |
| - build_go_images | |
| - build_server_images | |
| - build_java_images | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| version: ["1.30", "1.31"] | |
| tls: ["true", "false"] | |
| storage: ["posix", "s3"] | |
| exclude: | |
| - version: "1.30" | |
| tls: "false" | |
| storage: "posix" | |
| - version: "1.31" | |
| tls: "false" | |
| storage: "posix" | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Install Helm | |
| uses: azure/setup-helm@v4 | |
| - name: Initialise k3d | |
| id: initK3D | |
| run: bash .github/integration/scripts/charts/k3d.sh ${{matrix.version}} | |
| shell: bash | |
| - name: debug | |
| if: steps.initK3D.outcome == 'failure' | |
| run: k3d version list k3s | grep ${{matrix.version}} | |
| shell: bash | |
| - name: Deploy external services | |
| run: bash .github/integration/scripts/charts/dependencies.sh | |
| shell: bash | |
| - name: Deploy DB | |
| id: deployDB | |
| run: bash .github/integration/scripts/charts/deploy_charts.sh sda-db ${{ github.event.number }} ${{matrix.tls}} | |
| - name: debug | |
| if: failure() && steps.deployDB.outcome == 'failure' | |
| run: | | |
| kubectl describe pod postgres-sda-db-0 | |
| sleep 1 | |
| kubectl logs postgres-sda-db-0 | |
| - name: Deploy MQ | |
| id: deployMQ | |
| run: bash .github/integration/scripts/charts/deploy_charts.sh sda-mq ${{ github.event.number }} ${{matrix.tls}} | |
| shell: bash | |
| - name: debug | |
| if: failure() && steps.deployMQ.outcome == 'failure' | |
| run: | | |
| kubectl describe pod broker-sda-mq-0 | |
| sleep 1 | |
| kubectl logs broker-sda-mq-0 | |
| - name: Deploy pipeline | |
| run: bash .github/integration/scripts/charts/deploy_charts.sh sda-svc ${{ github.event.number }} ${{matrix.tls}} ${{matrix.storage}} | |
| shell: bash | |
| - name: Check deployment | |
| run: | | |
| sleep 30 | |
| for n in api auth download finalize inbox ingest mapper reencrypt sync syncapi verify; do | |
| if [ ${{matrix.storage}} == "posix" ] && [ "$n" == "auth" ] || [ "$n" == "sync" ] || [ "$n" == "syncapi" ]; then | |
| continue | |
| fi | |
| if [ ! $(kubectl get pods -l role="$n" -o=jsonpath='{.items[*].status.containerStatuses[0].ready}' | grep true) ]; then | |
| echo "$n is not ready after 30s, exiting" | |
| exit 1 | |
| fi | |
| done | |
| - name: test | |
| if: always() | |
| run: | | |
| kubectl get pods | |
| sleep 1 | |
| for svc in api auth finalize inbox ingest mapper reencrypt sync syncapi verify; do | |
| echo "## describe $svc" && kubectl describe pod -l role="$svc" | |
| sleep 1 | |
| echo "## logs $svc" && kubectl logs -l role="$svc" | |
| sleep 1 | |
| done | |
| shell: bash |