GitHub - ndfriedman/myMskccUtils: a directory of key utils I use for work at mskcc.org

ndfriedman / myMskccUtils Public

Notifications You must be signed in to change notification settings
Fork 1
Star 0

a directory of key utils I use for work at mskcc.org

Notifications

Name		Name	Last commit message	Last commit date
Latest commit History 94 Commits
plottingScripts		plottingScripts
shellScripts		shellScripts
add_signature_interpretation.py		add_signature_interpretation.py
adjustMafsForMutationSigs.py		adjustMafsForMutationSigs.py
analysis_utils.py		analysis_utils.py
attribute_mutations_to_signatures.py		attribute_mutations_to_signatures.py
bam_path_generator.py		bam_path_generator.py
calculate_nucleotide_mutation_spectra_from_maf.py		calculate_nucleotide_mutation_spectra_from_maf.py
clonality_analysis_util.py		clonality_analysis_util.py
combine_impact_data_util.py		combine_impact_data_util.py
create_cncf_or_rdata_file_list.py		create_cncf_or_rdata_file_list.py
data_compacting_and_cleaning_util.py		data_compacting_and_cleaning_util.py
double_mutation_analysis_util.py		double_mutation_analysis_util.py
format_signatures_csv_util.py		format_signatures_csv_util.py
get_data_about_cohort.py		get_data_about_cohort.py
landscape_plot_util.R		landscape_plot_util.R
landscape_plot_util.py		landscape_plot_util.py
mafAnno.R		mafAnno.R
maf_analysis_utils.py		maf_analysis_utils.py
maf_subsetter.py		maf_subsetter.py
mutationSigUtils.py		mutationSigUtils.py
mutation_modeling_util.py		mutation_modeling_util.py
mutation_permutation_utils.py		mutation_permutation_utils.py
prepare_maf_anno_commands.py		prepare_maf_anno_commands.py
runAnnotateMaf.R		runAnnotateMaf.R
run_gene_level_script.py		run_gene_level_script.py
scriptDescriptions.txt		scriptDescriptions.txt
signature_attribution_util.py		signature_attribution_util.py
signature_landscape_plot_prep_util.py		signature_landscape_plot_prep_util.py