-
Notifications
You must be signed in to change notification settings - Fork 33
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
split_axon_dendrite fails for big neurons #123
Comments
Sorry for taking so long. I'm afraid I don't have an immediate fix for this but in the future we should be able to implement something in navis-fastcore that will solve this. |
Another quick update: I had a crack at this but implemented in rust as part of an experiment in fastcore-rs. With that I can calculate the synapse flow (which is what failed previously) in ~30s for the hemibrain APL: (Brighter = higher synapse flow)Making an axon-dendrite split based off that currently still needs a bit of tinkering to get to work but if I cut some corners, we get something that doesn't look half bad: (dark blue = dendrites; cyan = axon)I always assumed the APL simply goes calyx (CA) -> peduncle -> lobes but if that skeleton is topologically correct, then the CA + peduncle are actually isolated from the lobes and it's actually CA + peduncle -> lobes. |
If the neuron has too many synapses the geodesic distance matrix can't be initialised because it takes too much memory.
The text was updated successfully, but these errors were encountered: