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Unfortunately hemibrain_reroot doesn't work with the new hemibrain surface mesh. I'm not sure if it is expanded with respect to the underlying meshes. For FAFB I have used the signed distance to help with soma identification rather than assuming that they have to be outside the mesh. Not sure if that could help here.
bad.soma = c("5813015982","885788485","5813013913")
# Read in these neurons
neurons.bs = neuprintr::neuprint_read_neurons(bad.soma)
# Re-root
neurons = hemibrain_reroot(neurons.bs, meshes = hemibrain.surf)
The text was updated successfully, but these errors were encountered:
In theory I reversed all dilations I did. I'm guessing the increase in size is the result of the initial downsampling (voxelsize = 1 micron) and the final remeshing to reduce the complexity.
I'm afraid the increase in size is also not uniform - otherwise I would have tried to compensate straight away.
A note that this is now improved with the updated hemibrain.surf in 8ba96b7 but one of the three neurons above still fails (for reasons that aren't completely clear to me).
Unfortunately
hemibrain_reroot
doesn't work with the new hemibrain surface mesh. I'm not sure if it is expanded with respect to the underlying meshes. For FAFB I have used the signed distance to help with soma identification rather than assuming that they have to be outside the mesh. Not sure if that could help here.The text was updated successfully, but these errors were encountered: