From daf8c86242050722da5f0d13cf829f52cb018d92 Mon Sep 17 00:00:00 2001 From: Susie Lee Date: Mon, 11 Nov 2024 09:46:42 +0000 Subject: [PATCH 1/2] Merge branch 'v0.8.3-changelog' into 'master' 0.8.3 changelog See merge request machine-learning/dorado!1260 (cherry picked from commit 2f52935a76ae395dddff9a3df3e9655a2d9726d0) ea8825b2 0.8.3 changelog --- CHANGELOG.md | 8 ++++++++ README.md | 8 ++++---- 2 files changed, 12 insertions(+), 4 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index d582b5424..eba71cea7 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -2,6 +2,14 @@ All notable changes to Dorado will be documented in this file. +# [0.8.3] (11 Nov 2024) + +This release of Dorado includes fixes and improvements to the Dorado 0.8.2 release, including a fix to SUP basecalling on Apple Silicon. + +* 03e5eecd22f48ea13ce3fc8f65269fab96fa1c27 - Fix incorrect basecalls being emitted from SUP models on Apple Silicon +* 987a237e192f28dc474baaea8d2aca81b2f5d57b - Improve error messaging when unable to run basecalling kernels on Apple GPU + + # [0.8.2] (21 Oct 2024) This release of Dorado includes fixes and improvements to the Dorado 0.8.1 release. diff --git a/README.md b/README.md index bcdd3cfeb..eea7d5f4f 100644 --- a/README.md +++ b/README.md @@ -22,10 +22,10 @@ If you encounter any problems building or running Dorado, please [report an issu First, download the relevant installer for your platform: - - [dorado-0.8.2-linux-x64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.8.2-linux-x64.tar.gz) - - [dorado-0.8.2-linux-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.8.2-linux-arm64.tar.gz) - - [dorado-0.8.2-osx-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.8.2-osx-arm64.zip) - - [dorado-0.8.2-win64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.8.2-win64.zip) + - [dorado-0.8.3-linux-x64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.8.3-linux-x64.tar.gz) + - [dorado-0.8.3-linux-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.8.3-linux-arm64.tar.gz) + - [dorado-0.8.3-osx-arm64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.8.3-osx-arm64.zip) + - [dorado-0.8.3-win64](https://cdn.oxfordnanoportal.com/software/analysis/dorado-0.8.3-win64.zip) Once the relevant `.tar.gz` or `.zip` archive is downloaded, extract the archive to your desired location. From 9fc02833431a7bed22a6e2fccaef049f5dcfcdc5 Mon Sep 17 00:00:00 2001 From: Susie Lee Date: Fri, 8 Nov 2024 18:20:54 +0000 Subject: [PATCH 2/2] Add link to dorado docs in readme --- README.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/README.md b/README.md index eea7d5f4f..2a99cfd2b 100644 --- a/README.md +++ b/README.md @@ -2,6 +2,8 @@ Dorado is a high-performance, easy-to-use, open source basecaller for Oxford Nanopore reads. +Detailed information about Dorado and its features is available in the [Dorado Documentation](https://dorado-docs.readthedocs.io/en/latest/). + ## Features * One executable with sensible defaults, automatic hardware detection and configuration.