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Bio.Alphabet no longer available #57

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james-vincent opened this issue Sep 30, 2024 · 1 comment
Open

Bio.Alphabet no longer available #57

james-vincent opened this issue Sep 30, 2024 · 1 comment

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@james-vincent
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Install with pixi, first run agfusion --version gives:

ImportError: Bio.Alphabet has been removed from Biopython. In many cases, the alphabet can simply be ignored and removed from scripts. In a few cases, you may need to specify the molecule_type as an annotation on a SeqRecord for your script to work correctly. Please see https://biopython.org/wiki/Alphabet for more information.

@james-vincent
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pip install agfusion works fine - should have followed directions
Version available in bioconda channel is out of date:
bioconda / packages / agfusion 1.252

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