From 2df264243e4d90693a94d7a155334404f692b32b Mon Sep 17 00:00:00 2001
From: ManonMartin <manon.martin@uclouvain.be>
Date: Thu, 3 Oct 2019 21:43:32 +0200
Subject: [PATCH] modified dependencies

---
 DESCRIPTION     | 2 +-
 NAMESPACE       | 2 +-
 R/ClustMIC.R    | 2 +-
 R/binClustMIC.R | 1 -
 R/zzz.R         | 4 ++--
 5 files changed, 5 insertions(+), 6 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index dbf1c1c..9c73a73 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -7,7 +7,7 @@ Authors@R: c(person("Manon", "Martin", role = c("aut", "cre"),email = "manon.mar
             person("Baptiste", "Feraud", role = c("aut"),email = "baptiste.feraud@uclouvain.be"))
 biocViews:
 Imports:
- clValid, phyclust, proxy, pls, pander, stats, ggplot2, reshape2, spls, plyr, gridExtra, clusterSim, ropls, modeest
+ clValid, phyclust, proxy, pls, pander, stats, ggplot2, reshape2, spls, caret, gridExtra, plyr,clusterSim, ropls
 Suggests: knitr, rmarkdown
 Description: Basic R routines implemented for metabolomics data analysis. It mainly involves statistical mutivariate methods and visualisation tools.
 License: GPL-2
diff --git a/NAMESPACE b/NAMESPACE
index 9fa239a..4081eb3 100644
--- a/NAMESPACE
+++ b/NAMESPACE
@@ -17,8 +17,8 @@ export(cvOPLSDA)
 export(pTreatGPL)
 import(ggplot2)
 import(gridExtra)
-import(modeest)
 import(reshape2)
+importFrom(caret,createFolds)
 importFrom(clValid,dunn)
 importFrom(clusterSim,index.DB)
 importFrom(grDevices,dev.new)
diff --git a/R/ClustMIC.R b/R/ClustMIC.R
index 95827cb..019b7bc 100644
--- a/R/ClustMIC.R
+++ b/R/ClustMIC.R
@@ -38,7 +38,7 @@
 #'@importFrom clValid dunn
 #'@importFrom clusterSim index.DB
 #'@importFrom phyclust RRand
-#'@import modeest
+
 
 
 
diff --git a/R/binClustMIC.R b/R/binClustMIC.R
index 4da5939..c3ea003 100644
--- a/R/binClustMIC.R
+++ b/R/binClustMIC.R
@@ -36,7 +36,6 @@
 #'@importFrom clValid dunn
 #'@importFrom clusterSim index.DB
 #'@importFrom phyclust RRand
-#'
 
 
 binClustMIC <- function(Positions, Distance, nClust, Trcl, Dendr = TRUE) {
diff --git a/R/zzz.R b/R/zzz.R
index e4c9860..8e229d0 100644
--- a/R/zzz.R
+++ b/R/zzz.R
@@ -1,8 +1,8 @@
 # WelcomeMessage
 
 .onLoad <- function(...) {
-  suppressPackageStartupMessages(library("modeest"))
-  suppressPackageStartupMessages(library("clusterSim"))
+  # suppressPackageStartupMessages(library("modeest"))
+  # suppressPackageStartupMessages(library("clusterSim"))
   packageStartupMessage("Package MBXUCL was correclty loaded\n")
   # message("message from .onLoad via message")
   # packageStartupMessage("message from .onLoad via