From 199350ebbd9f18e2c7483eeae9f2b1f5cdb51bd3 Mon Sep 17 00:00:00 2001 From: Thomas Harrop Date: Wed, 27 Sep 2023 13:36:20 +1000 Subject: [PATCH] point to bioconda and biocontainer --- README.md | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index 9bfa231..0b47226 100644 --- a/README.md +++ b/README.md @@ -73,7 +73,7 @@ The SPAdes assembler prior to version 3.15.4 is incompatible with Python 3.10 an We strongly recommend installing HybPiper using [conda](https://docs.conda.io/en/latest/miniconda.html) with a new environment. This will install HybPiper, all required Python packages, and all required external programs. If you have conda installed and the channels `bioconda` and `conda-forge` have already been added, this can be done using the command: ``` -conda create -n hybpiper -c chrisjackson-pellicle hybpiper +conda create -n hybpiper -c bioconda hybpiper ``` ...followed by: @@ -82,6 +82,12 @@ conda create -n hybpiper -c chrisjackson-pellicle hybpiper conda activate hybpiper ``` +HybPiper is also available as a [biocontainer](https://quay.io/repository/biocontainers/hybpiper?tab=tags), and can be run using Singularity (Apptainer) or Docker. + +```bash +apptainer pull docker://quay.io/biocontainers/hybpiper:2.1.6--h031d066_0 +``` + For full installation instructions, please see our wiki page: [https://github.com/mossmatters/HybPiper/wiki/Installation](https://github.com/mossmatters/HybPiper/wiki/Installation)