From db726799bb63d32bc374fc32b2604d283d27aa7c Mon Sep 17 00:00:00 2001 From: katiermullen <102704401+katiermullen@users.noreply.github.com> Date: Tue, 6 Aug 2024 21:46:16 -0600 Subject: [PATCH] Add new breed classifications and breeds for Cellosaurus request Closes #187 Addresses #181 --- src/ontology/components/highlevelclass.owl | 352 ++++++ src/ontology/components/highlevelclass.tsv | 45 +- src/ontology/components/livestockbreeds.owl | 1203 +++++++++++++++++++ src/ontology/components/livestockbreeds.tsv | 31 +- src/ontology/imports/cob_import.owl | 6 +- src/ontology/imports/ncbitaxon_import.owl | 719 ++++++++++- src/ontology/imports/ncbitaxon_terms.txt | 12 +- src/ontology/imports/omo_import.owl | 4 +- src/ontology/imports/ro_import.owl | 4 +- src/ontology/imports/wikidata_import.owl | 6 +- 10 files changed, 2349 insertions(+), 33 deletions(-) diff --git a/src/ontology/components/highlevelclass.owl b/src/ontology/components/highlevelclass.owl index 7a3f92d..b0b2ff1 100644 --- a/src/ontology/components/highlevelclass.owl +++ b/src/ontology/components/highlevelclass.owl @@ -58,12 +58,24 @@ + + + + + + + + + + + + @@ -88,12 +100,54 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -1509,6 +1563,304 @@ https://orcid.org/0000-0002-4142-7153 https://orcid.org/0000-0002-5002-8648 + + + + + + + + + + + + + + + + Vertebrate breed of the taxon Taeniopygia guttata. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. + Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ + Zebra finch breed + + + + + + https://orcid.org/0000-0002-4142-7153 + https://orcid.org/0000-0002-5002-8648 + + + + + Vertebrate breed of the taxon Taeniopygia guttata. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. + https://orcid.org/0000-0002-4142-7153 + https://orcid.org/0000-0002-5002-8648 + + + + + + + + + + + + + + + + + Vertebrate breed of the taxon Mesocricetus auratus. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. + Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ + Golden hamster breed + + + + + + https://orcid.org/0000-0002-4142-7153 + https://orcid.org/0000-0002-5002-8648 + + + + + Vertebrate breed of the taxon Mesocricetus auratus. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. + https://orcid.org/0000-0002-4142-7153 + https://orcid.org/0000-0002-5002-8648 + + + + + + + + + + + + + + + + + Vertebrate breed of the taxon Actinopteri comprised of all extant ray-finned fish minus the bichirs. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. + Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ + Actinopteri breed + + + + + + https://orcid.org/0000-0002-4142-7153 + https://orcid.org/0000-0002-5002-8648 + + + + + Vertebrate breed of the taxon Actinopteri comprised of all extant ray-finned fish minus the bichirs. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. + https://orcid.org/0000-0002-4142-7153 + https://orcid.org/0000-0002-5002-8648 + https://en.wikipedia.org/wiki/Actinopteri + + + + + + + + + + + + + + + + + Vertebrate breed of the taxon Oncorhynchus mykiss. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. + Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ + Rainbow trout breed + + + + + + https://orcid.org/0000-0002-4142-7153 + https://orcid.org/0000-0002-5002-8648 + + + + + Vertebrate breed of the taxon Oncorhynchus mykiss. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. + https://orcid.org/0000-0002-4142-7153 + https://orcid.org/0000-0002-5002-8648 + + + + + + + + + + + + + + + + + Vertebrate breed of the taxon Danio rerio. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. + Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ + Zebrafish breed + + + + + + https://orcid.org/0000-0002-4142-7153 + https://orcid.org/0000-0002-5002-8648 + + + + + Vertebrate breed of the taxon Danio rerio. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. + https://orcid.org/0000-0002-4142-7153 + https://orcid.org/0000-0002-5002-8648 + + + + + + + + + + + + + + + + + Vertebrate breed of the taxon Cyprinus carpio. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. + Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ + Common carp breed + + + + + + https://orcid.org/0000-0002-4142-7153 + https://orcid.org/0000-0002-5002-8648 + + + + + Vertebrate breed of the taxon Cyprinus carpio. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. + https://orcid.org/0000-0002-4142-7153 + https://orcid.org/0000-0002-5002-8648 + + + + + + + + + + + + + + + + + Vertebrate breed of the taxon Carassius auratus. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. + Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ + Goldfish breed + + + + + + https://orcid.org/0000-0002-4142-7153 + https://orcid.org/0000-0002-5002-8648 + + + + + Vertebrate breed of the taxon Carassius auratus. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. + https://orcid.org/0000-0002-4142-7153 + https://orcid.org/0000-0002-5002-8648 + + + + + + + + + + + + + + + + + Vertebrate breed of the taxon Oryzias latipes. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. + Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ + Japanese rice fish breed + + + + + + https://orcid.org/0000-0002-4142-7153 + https://orcid.org/0000-0002-5002-8648 + + + + + Vertebrate breed of the taxon Oryzias latipes. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. + https://orcid.org/0000-0002-4142-7153 + https://orcid.org/0000-0002-5002-8648 + + + + + + + + + + + + + + + + + Vertebrate breed of the taxon Xenopus. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. + Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ + Clawed frog breed + + + + + + https://orcid.org/0000-0002-4142-7153 + https://orcid.org/0000-0002-5002-8648 + + + + + Vertebrate breed of the taxon Xenopus. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. + https://orcid.org/0000-0002-4142-7153 + https://orcid.org/0000-0002-5002-8648 + diff --git a/src/ontology/components/highlevelclass.tsv b/src/ontology/components/highlevelclass.tsv index edfda4d..06bce56 100644 --- a/src/ontology/components/highlevelclass.tsv +++ b/src/ontology/components/highlevelclass.tsv @@ -1,38 +1,47 @@ VBO:ID (start after the species ID) label with species name Parent ID source for parents source for parents db-xref Defintion Source Source Equivalent Equivalent Comment Synonym Synonym Source ID LABEL SC % >A oboInOwl:source SPLIT=| >AT oboInOwl:source^^xsd:anyURI SPLIT=| A oboInOwl:hasDbXref A IAO:0000115 >A oboInOwl:source SPLIT=| >AT oboInOwl:source^^xsd:anyURI SPLIT=| EC 'Vertebrate breed' and % EC % A rdfs:comment A oboInOwl:hasExactSynonym >AT oboInOwl:source^^xsd:anyURI SPLIT=| -VBO:0400000 Vertebrate breed NCBITaxon:7742 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 A group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ -VBO:0400032 South American camelid breed VBO:0400000 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 Vertebrate breeds covering Llama, Guanaco, Vicuña and Alpaca breeds. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153|PMID:33724183 ('Llama breed' or 'Guanaco breed' or 'Vicuña breed' or 'Alpaca breed') Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ New World camelid https://www.merckvetmanual.com/exotic-and-laboratory-animals/llamas-and-alpacas/overview-of-llamas-and-alpacas -VBO:0001098 Llama breed VBO:0400032 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is Vertebrate breed of the taxon Lama glama. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:9844 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ -VBO:0000882 Guanaco breed VBO:0400032 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is Vertebrate breed of the taxon Lama guanicoe. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:9840 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ -VBO:0001721 Vicuña breed VBO:0400032 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is Vertebrate breed of the taxon Vicugna vicugna. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:9843 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ VBO:0000038 Alpaca breed VBO:0400032 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is Vertebrate breed of the taxon Vicugna pacos. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:30538 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ -VBO:0400033 Equid breed VBO:0400000 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 Vertebrate breed of the taxon Equidae. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:9788 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ -VBO:0400005 Ass breed VBO:0400033 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is Vertebrate breed of the taxon Equus asinus. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:9793 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ -VBO:0000931 Horse breed VBO:0400033 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is LBO:0000713 Vertebrate breed of the taxon Equus caballus. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:9796 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ -VBO:0400006 Bird breed VBO:0400000 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 Vertebrate breed of the taxon Aves. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:8782 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ +VBO:0000041 American bison breed VBO:0400019 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is Vertebrate breed of the taxon Bison bison. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:9901 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ +VBO:0000068 Buffalo breed VBO:0400019 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is LBO:0001042 Vertebrate breed of the taxon Bubalus bubalis. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:89462 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ VBO:0000087 Cassowary breed VBO:0400006 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is Vertebrate breed of the taxon Casuarius casuarius. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:8787 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ VBO:0000715 Emu breed VBO:0400006 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is Vertebrate breed of the taxon Dromaius novaehollandiae. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:8790 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ +VBO:0000882 Guanaco breed VBO:0400032 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is Vertebrate breed of the taxon Lama guanicoe. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:9840 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ +VBO:0000931 Horse breed VBO:0400033 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is LBO:0000713 Vertebrate breed of the taxon Equus caballus. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:9796 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ +VBO:0001098 Llama breed VBO:0400032 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is Vertebrate breed of the taxon Lama glama. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:9844 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ VBO:0001100 Nandu breed VBO:0400006 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is Vertebrate breed of the taxon Rhea. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:8796 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ -VBO:0400014 Ostrich breed VBO:0400006 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is Vertebrate breed of the taxon Struthio camelus. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:8801 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ -VBO:0400010 Chicken breed VBO:0400006 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is LBO:0000002 Vertebrate breed of the taxon Gallus gallus. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:9031 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ +VBO:0001199 Pig breed VBO:0400000 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is LBO:0000003 Vertebrate breed of the taxon Sus scrofa. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:9823 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ +VBO:0001223 Quail breed VBO:0400006 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is Vertebrate breed of the taxon Coturnix. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:9090 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ +VBO:0001721 Vicuña breed VBO:0400032 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is Vertebrate breed of the taxon Vicugna vicugna. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:9843 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ +VBO:0400000 Vertebrate breed NCBITaxon:7742 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 A group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ +VBO:0400005 Ass breed VBO:0400033 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is Vertebrate breed of the taxon Equus asinus. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:9793 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ +VBO:0400006 Bird breed VBO:0400000 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 Vertebrate breed of the taxon Aves. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:8782 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ VBO:0400008 Duck breed VBO:0400006 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is Vertebrate breeds covering the taxa Anas platyrhynchos, Anas platyrhynchos x Cairina moschata and Cairina moschata. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 (NCBITaxon:8839 or NCBITaxon:8841 or NCBITaxon:8855) Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ +VBO:0400010 Chicken breed VBO:0400006 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is LBO:0000002 Vertebrate breed of the taxon Gallus gallus. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:9031 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ VBO:0400011 Goose breed VBO:0400006 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is Vertebrate breed of the taxon Anser anser. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:8843 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ VBO:0400012 Guinea fowl breed VBO:0400006 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is Vertebrate breed of the taxon Numididae. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:8990 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ +VBO:0400014 Ostrich breed VBO:0400006 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is Vertebrate breed of the taxon Struthio camelus. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:8801 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ VBO:0400015 Pigeon breed VBO:0400006 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is Vertebrate breed of the taxon Columba livia. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:8932 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ -VBO:0400037 Pheasant breed VBO:0400006 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is Vertebrate breed of the taxon Phasianinae. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:9072 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ -VBO:0400038 Partridge breed VBO:0400006 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is Vertebrate breed of the taxon Perdicinae. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:466544 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ -VBO:0001223 Quail breed VBO:0400006 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is Vertebrate breed of the taxon Coturnix. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:9090 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ VBO:0400017 Turkey breed VBO:0400006 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is Vertebrate breed of the taxon Meleagris gallopavo. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:9103 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ VBO:0400018 Cat breed VBO:0400000 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 Vertebrate breed of the taxon Felis. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:9682 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ VBO:0400019 Bovine breed VBO:0400000 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 Vertebrate breed of the taxon Bovinae. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:27592 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ VBO:0400020 Cattle breed VBO:0400019 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 LBO:0000001 Vertebrate breed of the taxon Bos. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:9903 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ -VBO:0000041 American bison breed VBO:0400019 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is Vertebrate breed of the taxon Bison bison. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:9901 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ -VBO:0000068 Buffalo breed VBO:0400019 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is LBO:0001042 Vertebrate breed of the taxon Bubalus bubalis. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:89462 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ VBO:0400022 Camel breed VBO:0400000 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 Vertebrate breed of the taxon Camelus. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:9836 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ VBO:0400023 Deer breed VBO:0400000 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is Vertebrate breed of the taxon Cervinae. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:34878 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ VBO:0400024 Dog breed VBO:0400000 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is Vertebrate breed of the taxon Canis lupus familiaris. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:9615 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ VBO:0400025 Goat breed VBO:0400000 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is LBO:0000954 Vertebrate breed of the taxon Capra hircus. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:9925 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ VBO:0400026 Guinea pig breed VBO:0400000 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is Vertebrate breed of the taxon Cavia porcellus. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:10141 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ -VBO:0001199 Pig breed VBO:0400000 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is LBO:0000003 Vertebrate breed of the taxon Sus scrofa. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:9823 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ VBO:0400029 Rabbit breed VBO:0400000 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is Vertebrate breed of the taxon Oryctolagus cuniculus. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:9986 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ -VBO:0400030 Sheep breed VBO:0400000 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is LBO:0000004 Vertebrate breed of the taxon Ovis aries. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:9940 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ \ No newline at end of file +VBO:0400030 Sheep breed VBO:0400000 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is LBO:0000004 Vertebrate breed of the taxon Ovis aries. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:9940 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ +VBO:0400032 South American camelid breed VBO:0400000 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 Vertebrate breeds covering Llama, Guanaco, Vicuña and Alpaca breeds. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153|PMID:33724183 ('Llama breed' or 'Guanaco breed' or 'Vicuña breed' or 'Alpaca breed') Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ New World camelid https://www.merckvetmanual.com/exotic-and-laboratory-animals/llamas-and-alpacas/overview-of-llamas-and-alpacas +VBO:0400033 Equid breed VBO:0400000 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 Vertebrate breed of the taxon Equidae. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:9788 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ +VBO:0400037 Pheasant breed VBO:0400006 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is Vertebrate breed of the taxon Phasianinae. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:9072 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ +VBO:0400038 Partridge breed VBO:0400006 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://www.fao.org/dad-is Vertebrate breed of the taxon Perdicinae. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:466544 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ +VBO:0400039 Zebra finch breed VBO:0400006 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 Vertebrate breed of the taxon Taeniopygia guttata. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:59729 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ +VBO:0400040 Golden hamster breed VBO:0400000 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 Vertebrate breed of the taxon Mesocricetus auratus. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:10036 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ +VBO:0400041 Actinopteri breed VBO:0400000 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 Vertebrate breed of the taxon Actinopteri comprised of all extant ray-finned fish minus the bichirs. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 https://en.wikipedia.org/wiki/Actinopteri NCBITaxon:186623 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ +VBO:0400042 Rainbow trout breed VBO:0400041 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 Vertebrate breed of the taxon Oncorhynchus mykiss. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:8022 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ +VBO:0400043 Zebrafish breed VBO:0400041 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 Vertebrate breed of the taxon Danio rerio. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:7955 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ +VBO:0400044 Common carp breed VBO:0400041 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 Vertebrate breed of the taxon Cyprinus carpio. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:7962 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ +VBO:0400045 Goldfish breed VBO:0400041 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 Vertebrate breed of the taxon Carassius auratus. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:7957 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ +VBO:0400046 Japanese rice fish breed VBO:0400041 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 Vertebrate breed of the taxon Oryzias latipes. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:8090 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ +VBO:0400047 Clawed frog breed VBO:0400000 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 Vertebrate breed of the taxon Xenopus. A vertebrate breed is a group of vertebrate animals that share specific characteristics (such as traits, behavior, genetics) that distinguish it from other organisms of the same species, and/or for which cultural or geographical separation has led to the general acceptance of its separate identity. Breeds are formed through genetic isolation and either natural adaptation to the environment or selective breeding, or a combination of the two. https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 NCBITaxon:8353 Breeds included in VBO have been characterized, defined, and determined by international breed organizations, communities, experts, and/or have been reported in the literature. https://monarch-initiative.github.io/vertebrate-breed-ontology/general/general/ \ No newline at end of file diff --git a/src/ontology/components/livestockbreeds.owl b/src/ontology/components/livestockbreeds.owl index 91980f3..9e8ab9f 100644 --- a/src/ontology/components/livestockbreeds.owl +++ b/src/ontology/components/livestockbreeds.owl @@ -90,6 +90,48 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -20907,6 +20949,1167 @@ + + + + + + https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 + + + http://www.zebrafinch.com/NewZebra/chestnutflankwhite.html + CFW + Continental Chestnut Flanked White + Marked White + Continental Chestnut Flanked White (Zebra finch) + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + CFW + http://www.zebrafinch.com/NewZebra/chestnutflankwhite.html + + + + + Continental Chestnut Flanked White + + http://www.zebrafinch.com/NewZebra/chestnutflankwhite.html + + + + + Marked White + http://www.zebrafinch.com/NewZebra/chestnutflankwhite.html + + + + + + + + + + https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 + + + PMID:994204 + https://www.pancreapedia.org/sites/default/files/pour_hamster.2012.pdf + EC + Eppley colony + Eppley colony (Golden hamster) + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + EC + PMID:994204 + https://www.pancreapedia.org/sites/default/files/pour_hamster.2012.pdf + + + + + Eppley colony + + PMID:994204 + https://www.pancreapedia.org/sites/default/files/pour_hamster.2012.pdf + + + + + + + + + + https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 + + + PMID:6658511 + https://link.springer.com/article/10.1023/B:BEGE.0000023651.99481.d5 + Inbred GN + Inbred GN (Golden hamster) + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + Inbred GN + + PMID:6658511 + https://link.springer.com/article/10.1023/B:BEGE.0000023651.99481.d5 + + + + + + + + + + https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 + + + PMID:7441100 + http://netvet.wustl.edu/species/hamsters/hamstbio.txt + https://www.criver.com/products-services/find-model/lvg-golden-syrian-hamster?region=3611 + LAK/LVG + Lak:LVG + Lak:LVG(SYR) + Lak:LVG(SYR) (Golden hamster) + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + LAK/LVG + PMID:7441100 + http://netvet.wustl.edu/species/hamsters/hamstbio.txt + https://www.criver.com/products-services/find-model/lvg-golden-syrian-hamster?region=3611 + + + + + Lak:LVG + PMID:7441100 + http://netvet.wustl.edu/species/hamsters/hamstbio.txt + https://www.criver.com/products-services/find-model/lvg-golden-syrian-hamster?region=3611 + + + + + Lak:LVG(SYR) + + PMID:7441100 + http://netvet.wustl.edu/species/hamsters/hamstbio.txt + https://www.criver.com/products-services/find-model/lvg-golden-syrian-hamster?region=3611 + + + + + + + + + + https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 + + + https://netvet.wustl.edu/species/hamsters/hamstbio.txt + LSH/SsLAK + LSH/SsLak + LSH/SsLak (Golden hamster) + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + LSH/SsLAK + https://netvet.wustl.edu/species/hamsters/hamstbio.txt + + + + + LSH/SsLak + + https://netvet.wustl.edu/species/hamsters/hamstbio.txt + + + + + + + + + + https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 + + + PMID:26222540 + https://www.mbl.edu/research/resources-research-facilities/national-xenopus-resource/wild-type-frog-stocks + Nigerian St.549 + Xtr.NigerianSt549 + Nigerian St.549 (Western clawed frog) + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + Nigerian St.549 + + PMID:26222540 + https://www.mbl.edu/research/resources-research-facilities/national-xenopus-resource/wild-type-frog-stocks + + + + + Xtr.NigerianSt549 + PMID:26222540 + https://www.mbl.edu/research/resources-research-facilities/national-xenopus-resource/wild-type-frog-stocks + + + + + + + + + + https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 + + + https://afspubs.onlinelibrary.wiley.com/doi/abs/10.1577/1548-8667%281998%29010%3C0075%3ADOLTCL%3E2.0.CO%3B2 + https://www.sciencedirect.com/science/article/abs/pii/0145305X9500029S + Arlee 12 + Arlee 12 (Rainbow trout) + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + Arlee 12 + + https://afspubs.onlinelibrary.wiley.com/doi/abs/10.1577/1548-8667%281998%29010%3C0075%3ADOLTCL%3E2.0.CO%3B2 + https://www.sciencedirect.com/science/article/abs/pii/0145305X9500029S + + + + + + + + + + https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 + + + https://afspubs.onlinelibrary.wiley.com/doi/abs/10.1577/1548-8667%281998%29010%3C0075%3ADOLTCL%3E2.0.CO%3B2 + Hot Creek 71 + Hot Creek 71 (Rainbow trout) + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + Hot Creek 71 + + https://afspubs.onlinelibrary.wiley.com/doi/abs/10.1577/1548-8667%281998%29010%3C0075%3ADOLTCL%3E2.0.CO%3B2 + + + + + + + + + + https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 + + + PMID:17085058 + INRA Sy + INRA-Sy + INRA Sy (Rainbow trout) + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + INRA Sy + + PMID:17085058 + + + + + INRA-Sy + PMID:17085058 + + + + + + + + + + https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 + + + https://afspubs.onlinelibrary.wiley.com/doi/abs/10.1577/1548-8667%281998%29010%3C0075%3ADOLTCL%3E2.0.CO%3B2 + https://www.sciencedirect.com/science/article/abs/pii/S0145305X98000391 + OSU 142 + OSU-142 + OSU 142 (Rainbow trout) + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + OSU 142 + + https://afspubs.onlinelibrary.wiley.com/doi/abs/10.1577/1548-8667%281998%29010%3C0075%3ADOLTCL%3E2.0.CO%3B2 + https://www.sciencedirect.com/science/article/abs/pii/S0145305X98000391 + + + + + OSU-142 + https://afspubs.onlinelibrary.wiley.com/doi/abs/10.1577/1548-8667%281998%29010%3C0075%3ADOLTCL%3E2.0.CO%3B2 + https://www.sciencedirect.com/science/article/abs/pii/S0145305X98000391 + + + + + + + + + + https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 + + + ZDB-GENO-960809-7 + AB + AB (Zebrafish) + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + AB + + ZDB-GENO-960809-7 + + + + + + + + + + https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 + + + https://shop.glofish.com/collections/glofish-danio + GloFish + GloFish Danio + GloFish (Zebrafish) + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + GloFish + + https://shop.glofish.com/collections/glofish-danio + + + + + GloFish Danio + https://shop.glofish.com/collections/glofish-danio + + + + + + + + + + https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 + + + ZDB-GENO-990308-9 + SJD + SJD (Zebrafish) + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + SJD + + ZDB-GENO-990308-9 + + + + + + + + + + https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 + + + https://en.wikipedia.org/wiki/Comet_(goldfish) + https://www.thesprucepets.com/comet-goldfish-species-profile-5088723 + Comet + Comet-tailed + Comet (Goldfish) + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + Comet + + https://en.wikipedia.org/wiki/Comet_(goldfish) + https://www.thesprucepets.com/comet-goldfish-species-profile-5088723 + + + + + Comet-tailed + https://en.wikipedia.org/wiki/Comet_(goldfish) + https://www.thesprucepets.com/comet-goldfish-species-profile-5088723 + + + + + + + + + + https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 + + + https://en.wikipedia.org/wiki/Fantail_(goldfish) + https://www.thesprucepets.com/fantail-goldfish-fish-5322821 + Fantail + Fantail (Goldfish) + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + Fantail + + https://en.wikipedia.org/wiki/Fantail_(goldfish) + https://www.thesprucepets.com/fantail-goldfish-fish-5322821 + + + + + + + + + + https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 + + + https://en.wikipedia.org/wiki/Ryukin + Ryukin + Ryukin (Goldfish) + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + Ryukin + + https://en.wikipedia.org/wiki/Ryukin + + + + + + + + + + https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 + + + https://en.wikipedia.org/wiki/Wakin_goldfish + Wakin + Wakin (Goldfish) + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + Wakin + + https://en.wikipedia.org/wiki/Wakin_goldfish + + + + + + + + + + https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 + + + PMID:9431801 + Albino strain i3 + i3 + Albino strain i3 (Japanese rice fish) + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + Albino strain i3 + + PMID:9431801 + + + + + i3 + PMID:9431801 + + + + + + + + + + https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 + + + PMID:16341864 + PMID:27759163 + CAB + Cab + CAB (Japanese rice fish) + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + CAB + + PMID:16341864 + PMID:27759163 + + + + + Cab + PMID:16341864 + PMID:27759163 + + + + + + + + + + https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 + + + PMID:16341864 + HB32 + HB32 (Japanese rice fish) + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + HB32 + + PMID:16341864 + + + + + + + + + + https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 + Derived from HB32. + + + https://link.springer.com/article/10.1007/BF00571259 + https://nagoya.repo.nii.ac.jp/record/11937/files/KJ00005673903.pdf + HB32C + HB32C (Japanese rice fish) + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + Derived from HB32. + https://link.springer.com/article/10.1007/BF00571259 + https://nagoya.repo.nii.ac.jp/record/11937/files/KJ00005673903.pdf + + + + + HB32C + + https://link.springer.com/article/10.1007/BF00571259 + https://nagoya.repo.nii.ac.jp/record/11937/files/KJ00005673903.pdf + + + + + + + + + + https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 + + + PMID:24408034 + https://nagoya.repo.nii.ac.jp/record/11937/files/KJ00005673903.pdf + Hd-rR + HdrR + HdrR (Japanese rice fish) + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + Hd-rR + PMID:24408034 + https://nagoya.repo.nii.ac.jp/record/11937/files/KJ00005673903.pdf + + + + + HdrR + + PMID:24408034 + https://nagoya.repo.nii.ac.jp/record/11937/files/KJ00005673903.pdf + + + + + + + + + + https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 + + + PMID:16341864 + PMID:24408034 + https://nagoya.repo.nii.ac.jp/record/11937/files/KJ00005673903.pdf + https://www.ebi.ac.uk/ena/browser/view/BAAE00000000 + HNI + Houiken Niigata-I + HNI (Japanese rice fish) + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + HNI + + PMID:16341864 + PMID:24408034 + https://nagoya.repo.nii.ac.jp/record/11937/files/KJ00005673903.pdf + https://www.ebi.ac.uk/ena/browser/view/BAAE00000000 + + + + + Houiken Niigata-I + https://orcid.org/0000-0003-2826-6444 + + + + + + + + + + https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 + + + https://link.springer.com/article/10.1007/BF00571259 + https://nagoya.repo.nii.ac.jp/record/11937/files/KJ00005673903.pdf + HO4C + HO4C (Japanese rice fish) + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + HO4C + + https://link.springer.com/article/10.1007/BF00571259 + https://nagoya.repo.nii.ac.jp/record/11937/files/KJ00005673903.pdf + + + + + + + + + + https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 + + + PMID:24408034 + Kaga + Kaga (Japanese rice fish) + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + Kaga + + PMID:24408034 + + + + + + + + + + https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 + + + PMID:11226275 + PMID:26054930 + Himedaka + OR + Orange commercial variety + Orange-red + Orange-red (Japanese rice fish) + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + Himedaka + PMID:11226275 + PMID:26054930 + + + + + OR + PMID:11226275 + PMID:26054930 + + + + + Orange commercial variety + PMID:26054930 + + + + + Orange-red + + PMID:11226275 + PMID:26054930 + + + + + + + + + + https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 + + + PMID:24945156 + https://nagoya.repo.nii.ac.jp/record/11937/files/KJ00005673903.pdf + SOK + Sokcho + SOK (Japanese rice fish) + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + + https://orcid.org/0000-0002-5002-8648 + https://orcid.org/0000-0003-2826-6444 + + + + + SOK + + PMID:24945156 + https://nagoya.repo.nii.ac.jp/record/11937/files/KJ00005673903.pdf + + + + + Sokcho + PMID:24945156 + + + + diff --git a/src/ontology/components/livestockbreeds.tsv b/src/ontology/components/livestockbreeds.tsv index 0fc2a7b..9375be7 100644 --- a/src/ontology/components/livestockbreeds.tsv +++ b/src/ontology/components/livestockbreeds.tsv @@ -1,5 +1,5 @@ vbo_id term_label to_be_ignored breed_name_to_be_used_for_label species_to_be_used_for_label internal_term_merge_indicator_vboid_into_vboid internal_date_and_issue_separated_by_pipe_yymmdd_dash_issue gh_issue_NOT_merge_obsolete parent_ID source_for_parents source_for_parents parent_ID source_for_parents source_for_parents parent_ID source_for_parents source_for_parents most_common_name synonym_type_most_common_name source_for_most_common_name source_for_most_common_name synonym_dadis_name_not_used_in_label source_for_synonym_dadis source_for_synonym_dadis synonym_1 source_for_synonym_1 source_for_synonym_1 synonym_2 source_for_synonym_2 source_for_synonym_2 synonym_3 source_for_synonym_3 source_for_synonym_3 synonym_4 source_for_synonym_4 source_for_synonym_4 synonym_5 source_for_synonym_5 source_for_synonym_5 synonym_label_from_merged_term source_for_merged_term Breed_code_1 all_source_for_breed_code_1_separated_by_pipe all_source_for_breed_code_1_separated_by_pipe Breed_code_2 all_source_for_breed_code_2_separated_by_pipe all_source_for_breed_code_2_separated_by_pipe definition definition_xref definition_xref xref1 source_for_xref1 source_for_xref1 xref2 source_for_xref2 source_for_xref2 omia_xref_internal recognition_status_1 source_for_recognition_status_1 source_for_recognition_status_1 recognition_status_2 source_for_recognition_status_2 source_for_recognition_status_2 recognition_status_3 source_for_recognition_status_3 source_for_recognition_status_3 source_for_breed source_for_breed contributors contributors comment general_comment comment_from_obsoletion description_of_origin source_for_description_of_origin source_for_description_of_origin domestication_status source_for_domestication_status wikidata_link_for_the_country_exists_in_country_subclass source_for_country_subclass source_for_country_subclass obsoletion_type obsolete replacement_term replacement_label comment GH_issue obsolescence_reason curator_note dadis_name dadis_species_name dadis_country dadis_iso3_code in_subset_transboundary -ID LABEL AT IAO:0000233^^xsd:anyURI SPLIT=| SC % >AT oboInOwl:source^^xsd:anyURI SPLIT=| >A oboInOwl:source SPLIT=| SC % >AT oboInOwl:source^^xsd:anyURI >A oboInOwl:source SPLIT=| SC % >AT oboInOwl:source^^xsd:anyURI >A oboInOwl:source SPLIT=| A oboInOwl:hasExactSynonym >AI oboInOwl:hasSynonymType >AT oboInOwl:source^^xsd:anyURI SPLIT=| >A oboInOwl:source SPLIT=| A oboInOwl:hasExactSynonym >AT oboInOwl:source^^xsd:anyURI SPLIT=| >A oboInOwl:source SPLIT=| A oboInOwl:hasExactSynonym >AT oboInOwl:source^^xsd:anyURI SPLIT=| >A oboInOwl:source SPLIT=| A oboInOwl:hasExactSynonym >AT oboInOwl:source^^xsd:anyURI SPLIT=| >A oboInOwl:source SPLIT=| A oboInOwl:hasExactSynonym >AT oboInOwl:source^^xsd:anyURI SPLIT=| >A oboInOwl:source SPLIT=| A oboInOwl:hasExactSynonym >AT oboInOwl:source^^xsd:anyURI SPLIT=| >A oboInOwl:source SPLIT=| A oboInOwl:hasExactSynonym >AT oboInOwl:source^^xsd:anyURI SPLIT=| >A oboInOwl:source SPLIT=| A oboInOwl:hasExactSynonym >A oboInOwl:source SPLIT=| A http://purl.obolibrary.org/obo/vbo#breed_code >AT oboInOwl:source^^xsd:anyURI SPLIT=| >A oboInOwl:source SPLIT=| A http://purl.obolibrary.org/obo/vbo#breed_code >AT oboInOwl:source^^xsd:anyURI SPLIT=| >A oboInOwl:source SPLIT=| A IAO:0000115 >AT oboInOwl:hasDbXref^^xsd:anyURI SPLIT=| >A oboInOwl:hasDbXref SPLIT=| A oboInOwl:hasDbXref SPLIT=| >AT oboInOwl:source^^xsd:anyURI SPLIT=| >A oboInOwl:source SPLIT=| A oboInOwl:hasDbXref SPLIT=| >AT oboInOwl:source^^xsd:anyURI SPLIT=| >A oboInOwl:source SPLIT=| AI http://purl.obolibrary.org/obo/vbo#breed_recognition_status >AT oboInOwl:source^^xsd:anyURI SPLIT=| >A oboInOwl:source SPLIT=| AI http://purl.obolibrary.org/obo/vbo#breed_recognition_status >AT oboInOwl:source^^xsd:anyURI SPLIT=| >A oboInOwl:source SPLIT=| AI http://purl.obolibrary.org/obo/vbo#breed_recognition_status >AT oboInOwl:source^^xsd:anyURI SPLIT=| >A oboInOwl:source SPLIT=| AT dc:source^^xsd:anyURI SPLIT=| A dc:source SPLIT=| AI dc:contributor SPLIT=| AI dc:contributor SPLIT=| A rdfs:comment A http://purl.obolibrary.org/obo/vbo#origindescription >AT oboInOwl:source^^xsd:anyURI >A oboInOwl:source AI http://purl.obolibrary.org/obo/vbo#hasdomesticationstatus >AT oboInOwl:source^^xsd:anyURI SC 'located in' value % >AT oboInOwl:source^^xsd:anyURI >A oboInOwl:source TYPE AT owl:deprecated^^xsd:boolean AI IAO:0100001 AT IAO:0000233^^xsd:anyURI A IAO:0000231 +ID LABEL AT IAO:0000233^^xsd:anyURI SPLIT=| SC % >AT oboInOwl:source^^xsd:anyURI SPLIT=| >A oboInOwl:source SPLIT=| SC % >AT oboInOwl:source^^xsd:anyURI >A oboInOwl:source SPLIT=| SC % >AT oboInOwl:source^^xsd:anyURI >A oboInOwl:source SPLIT=| A oboInOwl:hasExactSynonym >AI oboInOwl:hasSynonymType >AT oboInOwl:source^^xsd:anyURI SPLIT=| >A oboInOwl:source SPLIT=| A oboInOwl:hasExactSynonym >AT oboInOwl:source^^xsd:anyURI SPLIT=| >A oboInOwl:source SPLIT=| A oboInOwl:hasExactSynonym >AT oboInOwl:source^^xsd:anyURI SPLIT=| >A oboInOwl:source SPLIT=| A oboInOwl:hasExactSynonym >AT oboInOwl:source^^xsd:anyURI SPLIT=| >A oboInOwl:source SPLIT=| A oboInOwl:hasExactSynonym >AT oboInOwl:source^^xsd:anyURI SPLIT=| >A oboInOwl:source SPLIT=| A oboInOwl:hasExactSynonym >AT oboInOwl:source^^xsd:anyURI SPLIT=| >A oboInOwl:source SPLIT=| A oboInOwl:hasExactSynonym >AT oboInOwl:source^^xsd:anyURI SPLIT=| >A oboInOwl:source SPLIT=| A oboInOwl:hasExactSynonym >A oboInOwl:source SPLIT=| A http://purl.obolibrary.org/obo/vbo#breed_code >AT oboInOwl:source^^xsd:anyURI SPLIT=| >A oboInOwl:source SPLIT=| A http://purl.obolibrary.org/obo/vbo#breed_code >AT oboInOwl:source^^xsd:anyURI SPLIT=| >A oboInOwl:source SPLIT=| A IAO:0000115 >AT oboInOwl:hasDbXref^^xsd:anyURI SPLIT=| >A oboInOwl:hasDbXref SPLIT=| A oboInOwl:hasDbXref SPLIT=| >AT oboInOwl:source^^xsd:anyURI SPLIT=| >A oboInOwl:source SPLIT=| A oboInOwl:hasDbXref SPLIT=| >AT oboInOwl:source^^xsd:anyURI SPLIT=| >A oboInOwl:source SPLIT=| AI http://purl.obolibrary.org/obo/vbo#breed_recognition_status >AT oboInOwl:source^^xsd:anyURI SPLIT=| >A oboInOwl:source SPLIT=| AI http://purl.obolibrary.org/obo/vbo#breed_recognition_status >AT oboInOwl:source^^xsd:anyURI SPLIT=| >A oboInOwl:source SPLIT=| AI http://purl.obolibrary.org/obo/vbo#breed_recognition_status >AT oboInOwl:source^^xsd:anyURI SPLIT=| >A oboInOwl:source SPLIT=| AT dc:source^^xsd:anyURI SPLIT=| A dc:source SPLIT=| AI dc:contributor SPLIT=| AI dc:contributor SPLIT=| A rdfs:comment A http://purl.obolibrary.org/obo/vbo#origindescription >AT oboInOwl:source^^xsd:anyURI SPLIT=| >A oboInOwl:source SPLIT=| AI http://purl.obolibrary.org/obo/vbo#hasdomesticationstatus >AT oboInOwl:source^^xsd:anyURI SC 'located in' value % >AT oboInOwl:source^^xsd:anyURI >A oboInOwl:source TYPE AT owl:deprecated^^xsd:boolean AI IAO:0100001 AT IAO:0000233^^xsd:anyURI A IAO:0000231 VBO:0016876 Javanese Fat Tail (Sheep) Javanese Fat Tail Sheep NCBITaxon:9940 PMID:3759678 VBO:0400000 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 Javanese Fat Tail http://purl.obolibrary.org/obo/vbo#most_common_name PMID:3759678 OMIA:1260 PMID:3759678 VBO:0016877 Semarang (Sheep) Semarang Sheep NCBITaxon:9940 PMID:3759678 VBO:0400000 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 Semarang http://purl.obolibrary.org/obo/vbo#most_common_name PMID:3759678 OMIA:1261 PMID:3759678 VBO:0016878 Xiushui Yellow (Chicken) Xiushui Yellow Chicken NCBITaxon:9031 PMID:34904261 VBO:0400000 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 Xiushui Yellow http://purl.obolibrary.org/obo/vbo#most_common_name PMID:34904261 OMIA:1220 PMID:34904261 http://orcid.org/0000-0002-9178-3965 @@ -607,4 +607,31 @@ VBO:0017480 Zemmour (Sheep) Zemmour Sheep 240514-128 https://github.com/monarc VBO:0017481 Zlatusha (Sheep) Zlatusha Sheep 240514-128 https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/128 NCBITaxon:9940 LBO:0000689 VBO:0400000 https://orcid.org/0000-0002-9178-3965 Zlatusha http://purl.obolibrary.org/obo/vbo#most_common_name LBO:0000689|ISBN:9781789241532|ISBN:9781845934668 Zlatoucha ISBN:9781789241532 LBO:0000689|ISBN:9781789241532|ISBN:9781845934668 https://orcid.org/0000-0002-9178-3965 VBO:0017482 Zoulay (Sheep) Zoulay Sheep 240514-128 https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/128 NCBITaxon:9940 LBO:0000690 VBO:0400000 https://orcid.org/0000-0002-9178-3965 Zoulay http://purl.obolibrary.org/obo/vbo#most_common_name LBO:0000690|ISBN:9781789241532|ISBN:9781845934668 Berber à laine Zoulai ISBN:9781789241532 Mouton de montagne à laine Zoulai ISBN:9781789241532 LBO:0000690|ISBN:9781789241532|ISBN:9781845934668 https://orcid.org/0000-0002-9178-3965 VBO:0017483 Warmblood (Horse) Warmblood Horse 240522-170 https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/170 NCBITaxon:9796 https://orcid.org/0000-0002-5002-8648 VBO:0400000 https://orcid.org/0000-0002-5002-8648 Warmblood http://purl.obolibrary.org/obo/vbo#most_common_name https://en.wikipedia.org/wiki/Warmblood PMID:37592264 https://en.wikipedia.org/wiki/Warmblood PMID:37592264 https://orcid.org/0000-0002-5002-8648 Warmbloods are a group of middle-weight horse types and breeds primarily originating in Europe and registered with organizations that are characterized by open studbook policy, studbook selection, and the aim of breeding for equestrian sport. https://en.wikipedia.org/wiki/Warmblood -VBO:0017484 Four-Horned Goat (Goat) Four-Horned Goat Goat 240712-183 https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/183 NCBITaxon:9925 https://de.wikipedia.org/wiki/Vierhornziege https://orcid.org/0000-0002-5520-6597 VBO:0400000 https://de.wikipedia.org/wiki/Vierhornziege https://orcid.org/0000-0002-5520-6597 Four-Horned Goat http://purl.obolibrary.org/obo/vbo#most_common_name https://de.wikipedia.org/wiki/Vierhornziege https://orcid.org/0000-0002-5520-6597 Vierhornziege https://de.wikipedia.org/wiki/Vierhornziege https://orcid.org/0000-0002-5520-6597 Fourhorn Goat https://orcid.org/0000-0002-5520-6597 https://de.wikipedia.org/wiki/Vierhornziege https://orcid.org/0000-0002-5520-6597 https://orcid.org/0000-0002-5520-6597|https://orcid.org/0000-0002-5002-8648 \ No newline at end of file +VBO:0017484 Four-Horned Goat (Goat) Four-Horned Goat Goat 240712-183 https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/183 NCBITaxon:9925 https://de.wikipedia.org/wiki/Vierhornziege https://orcid.org/0000-0002-5520-6597 VBO:0400000 https://de.wikipedia.org/wiki/Vierhornziege https://orcid.org/0000-0002-5520-6597 Four-Horned Goat http://purl.obolibrary.org/obo/vbo#most_common_name https://de.wikipedia.org/wiki/Vierhornziege https://orcid.org/0000-0002-5520-6597 Vierhornziege https://de.wikipedia.org/wiki/Vierhornziege https://orcid.org/0000-0002-5520-6597 Fourhorn Goat https://orcid.org/0000-0002-5520-6597 https://de.wikipedia.org/wiki/Vierhornziege https://orcid.org/0000-0002-5520-6597 https://orcid.org/0000-0002-5520-6597|https://orcid.org/0000-0002-5002-8648 +VBO:0017485 Continental Chestnut Flanked White (Zebra finch) Continental Chestnut Flanked White Zebra finch 240806-181 https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 NCBITaxon:59729 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 VBO:0400000 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 Continental Chestnut Flanked White http://purl.obolibrary.org/obo/vbo#most_common_name http://www.zebrafinch.com/NewZebra/chestnutflankwhite.html CFW http://www.zebrafinch.com/NewZebra/chestnutflankwhite.html Marked White http://www.zebrafinch.com/NewZebra/chestnutflankwhite.html http://www.zebrafinch.com/NewZebra/chestnutflankwhite.html https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 +VBO:0017486 Eppley colony (Golden hamster) Eppley colony Golden hamster 240806-181 https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 NCBITaxon:10036 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 VBO:0400000 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 Eppley colony http://purl.obolibrary.org/obo/vbo#most_common_name https://www.pancreapedia.org/sites/default/files/pour_hamster.2012.pdf PMID:994204 EC https://www.pancreapedia.org/sites/default/files/pour_hamster.2012.pdf PMID:994204 https://www.pancreapedia.org/sites/default/files/pour_hamster.2012.pdf PMID:994204 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 +VBO:0017487 Inbred GN (Golden hamster) Inbred GN Golden hamster 240806-181 https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 NCBITaxon:10036 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 VBO:0400000 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 Inbred GN http://purl.obolibrary.org/obo/vbo#most_common_name https://link.springer.com/article/10.1023/B:BEGE.0000023651.99481.d5 PMID:6658511 https://link.springer.com/article/10.1023/B:BEGE.0000023651.99481.d5 PMID:6658511 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 +VBO:0017488 Lak:LVG(SYR) (Golden hamster) Lak:LVG(SYR) Golden hamster 240806-181 https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 NCBITaxon:10036 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 VBO:0400000 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 Lak:LVG(SYR) http://purl.obolibrary.org/obo/vbo#most_common_name http://netvet.wustl.edu/species/hamsters/hamstbio.txt|https://www.criver.com/products-services/find-model/lvg-golden-syrian-hamster?region=3611 PMID:7441100 Lak:LVG http://netvet.wustl.edu/species/hamsters/hamstbio.txt|https://www.criver.com/products-services/find-model/lvg-golden-syrian-hamster?region=3611 PMID:7441100 LAK/LVG http://netvet.wustl.edu/species/hamsters/hamstbio.txt|https://www.criver.com/products-services/find-model/lvg-golden-syrian-hamster?region=3611 PMID:7441100 http://netvet.wustl.edu/species/hamsters/hamstbio.txt|https://www.criver.com/products-services/find-model/lvg-golden-syrian-hamster?region=3611 PMID:7441100 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 +VBO:0017489 LSH/SsLak (Golden hamster) LSH/SsLak Golden hamster 240806-181 https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 NCBITaxon:10036 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 VBO:0400000 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 LSH/SsLak http://purl.obolibrary.org/obo/vbo#most_common_name https://netvet.wustl.edu/species/hamsters/hamstbio.txt LSH/SsLAK https://netvet.wustl.edu/species/hamsters/hamstbio.txt https://netvet.wustl.edu/species/hamsters/hamstbio.txt https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 +VBO:0017490 Nigerian St.549 (Western clawed frog) Nigerian St.549 Western clawed frog 240806-181 https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 NCBITaxon:8364 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 VBO:0400000 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 Nigerian St.549 http://purl.obolibrary.org/obo/vbo#most_common_name https://www.mbl.edu/research/resources-research-facilities/national-xenopus-resource/wild-type-frog-stocks PMID:26222540 Xtr.NigerianSt549 https://www.mbl.edu/research/resources-research-facilities/national-xenopus-resource/wild-type-frog-stocks PMID:26222540 https://www.mbl.edu/research/resources-research-facilities/national-xenopus-resource/wild-type-frog-stocks PMID:26222540 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 +VBO:0017491 Arlee 12 (Rainbow trout) Arlee 12 Rainbow trout 240806-181 https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 NCBITaxon:8022 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 VBO:0400000 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 Arlee 12 http://purl.obolibrary.org/obo/vbo#most_common_name https://www.sciencedirect.com/science/article/abs/pii/0145305X9500029S|https://afspubs.onlinelibrary.wiley.com/doi/abs/10.1577/1548-8667%281998%29010%3C0075%3ADOLTCL%3E2.0.CO%3B2 https://www.sciencedirect.com/science/article/abs/pii/0145305X9500029S|https://afspubs.onlinelibrary.wiley.com/doi/abs/10.1577/1548-8667%281998%29010%3C0075%3ADOLTCL%3E2.0.CO%3B2 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 +VBO:0017492 Hot Creek 71 (Rainbow trout) Hot Creek 71 Rainbow trout 240806-181 https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 NCBITaxon:8022 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 VBO:0400000 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 Hot Creek 71 http://purl.obolibrary.org/obo/vbo#most_common_name https://afspubs.onlinelibrary.wiley.com/doi/abs/10.1577/1548-8667%281998%29010%3C0075%3ADOLTCL%3E2.0.CO%3B2 https://afspubs.onlinelibrary.wiley.com/doi/abs/10.1577/1548-8667%281998%29010%3C0075%3ADOLTCL%3E2.0.CO%3B2 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 +VBO:0017493 INRA Sy (Rainbow trout) INRA Sy Rainbow trout 240806-181 https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 NCBITaxon:8022 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 VBO:0400000 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 INRA Sy http://purl.obolibrary.org/obo/vbo#most_common_name PMID:17085058 INRA-Sy PMID:17085058 PMID:17085058 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 +VBO:0017494 OSU 142 (Rainbow trout) OSU 142 Rainbow trout 240806-181 https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 NCBITaxon:8022 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 VBO:0400000 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 OSU 142 http://purl.obolibrary.org/obo/vbo#most_common_name https://afspubs.onlinelibrary.wiley.com/doi/abs/10.1577/1548-8667%281998%29010%3C0075%3ADOLTCL%3E2.0.CO%3B2|https://www.sciencedirect.com/science/article/abs/pii/S0145305X98000391 OSU-142 https://afspubs.onlinelibrary.wiley.com/doi/abs/10.1577/1548-8667%281998%29010%3C0075%3ADOLTCL%3E2.0.CO%3B2|https://www.sciencedirect.com/science/article/abs/pii/S0145305X98000391 https://afspubs.onlinelibrary.wiley.com/doi/abs/10.1577/1548-8667%281998%29010%3C0075%3ADOLTCL%3E2.0.CO%3B2|https://www.sciencedirect.com/science/article/abs/pii/S0145305X98000391 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 +VBO:0017495 AB (Zebrafish) AB Zebrafish 240806-181 https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 NCBITaxon:7955 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 VBO:0400000 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 AB http://purl.obolibrary.org/obo/vbo#most_common_name ZDB-GENO-960809-7 ZDB-GENO-960809-7 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 +VBO:0017496 GloFish (Zebrafish) GloFish Zebrafish 240806-181 https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 NCBITaxon:7955 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 VBO:0400000 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 GloFish http://purl.obolibrary.org/obo/vbo#most_common_name https://shop.glofish.com/collections/glofish-danio GloFish Danio https://shop.glofish.com/collections/glofish-danio https://shop.glofish.com/collections/glofish-danio https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 +VBO:0017497 SJD (Zebrafish) SJD Zebrafish 240806-181 https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 NCBITaxon:7955 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 VBO:0400000 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 SJD http://purl.obolibrary.org/obo/vbo#most_common_name ZDB-GENO-990308-9 ZDB-GENO-990308-9 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 +VBO:0017498 Comet (Goldfish) Comet Goldfish 240806-181 https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 NCBITaxon:7957 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 VBO:0400000 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 Comet http://purl.obolibrary.org/obo/vbo#most_common_name https://en.wikipedia.org/wiki/Comet_(goldfish)|https://www.thesprucepets.com/comet-goldfish-species-profile-5088723 Comet-tailed https://en.wikipedia.org/wiki/Comet_(goldfish)|https://www.thesprucepets.com/comet-goldfish-species-profile-5088723 https://en.wikipedia.org/wiki/Comet_(goldfish)|https://www.thesprucepets.com/comet-goldfish-species-profile-5088723 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 +VBO:0017499 Fantail (Goldfish) Fantail Goldfish 240806-181 https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 NCBITaxon:7957 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 VBO:0400000 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 Fantail http://purl.obolibrary.org/obo/vbo#most_common_name https://en.wikipedia.org/wiki/Fantail_(goldfish)|https://www.thesprucepets.com/fantail-goldfish-fish-5322821 https://en.wikipedia.org/wiki/Fantail_(goldfish)|https://www.thesprucepets.com/fantail-goldfish-fish-5322821 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 +VBO:0017500 Ryukin (Goldfish) Ryukin Goldfish 240806-181 https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 NCBITaxon:7957 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 VBO:0400000 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 Ryukin http://purl.obolibrary.org/obo/vbo#most_common_name https://en.wikipedia.org/wiki/Ryukin https://en.wikipedia.org/wiki/Ryukin https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 +VBO:0017501 Wakin (Goldfish) Wakin Goldfish 240806-181 https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 NCBITaxon:7957 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 VBO:0400000 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 Wakin http://purl.obolibrary.org/obo/vbo#most_common_name https://en.wikipedia.org/wiki/Wakin_goldfish https://en.wikipedia.org/wiki/Wakin_goldfish https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 +VBO:0017502 Albino strain i3 (Japanese rice fish) Albino strain i3 Japanese rice fish 240806-181 https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 NCBITaxon:8090 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 VBO:0400000 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 Albino strain i3 http://purl.obolibrary.org/obo/vbo#most_common_name PMID:9431801 i3 PMID:9431801 PMID:9431801 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 +VBO:0017503 CAB (Japanese rice fish) CAB Japanese rice fish 240806-181 https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 NCBITaxon:8090 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 VBO:0400000 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 CAB http://purl.obolibrary.org/obo/vbo#most_common_name PMID:27759163|PMID:16341864 Cab PMID:27759163|PMID:16341864 PMID:27759163|PMID:16341864 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 +VBO:0017504 HB32 (Japanese rice fish) HB32 Japanese rice fish 240806-181 https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 NCBITaxon:8090 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 VBO:0400000 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 HB32 http://purl.obolibrary.org/obo/vbo#most_common_name PMID:16341864 PMID:16341864 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 +VBO:0017505 HB32C (Japanese rice fish) HB32C Japanese rice fish 240806-181 https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 NCBITaxon:8090 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 VBO:0400000 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 HB32C http://purl.obolibrary.org/obo/vbo#most_common_name https://link.springer.com/article/10.1007/BF00571259|https://nagoya.repo.nii.ac.jp/record/11937/files/KJ00005673903.pdf https://link.springer.com/article/10.1007/BF00571259|https://nagoya.repo.nii.ac.jp/record/11937/files/KJ00005673903.pdf https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 Derived from HB32. https://link.springer.com/article/10.1007/BF00571259|https://nagoya.repo.nii.ac.jp/record/11937/files/KJ00005673903.pdf +VBO:0017506 HdrR (Japanese rice fish) HdrR Japanese rice fish 240806-181 https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 NCBITaxon:8090 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 VBO:0400000 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 HdrR http://purl.obolibrary.org/obo/vbo#most_common_name https://nagoya.repo.nii.ac.jp/record/11937/files/KJ00005673903.pdf PMID:24408034 Hd-rR https://nagoya.repo.nii.ac.jp/record/11937/files/KJ00005673903.pdf PMID:24408034 https://nagoya.repo.nii.ac.jp/record/11937/files/KJ00005673903.pdf PMID:24408034 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 +VBO:0017507 HNI (Japanese rice fish) HNI Japanese rice fish 240806-181 https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 NCBITaxon:8090 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 VBO:0400000 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 HNI http://purl.obolibrary.org/obo/vbo#most_common_name https://nagoya.repo.nii.ac.jp/record/11937/files/KJ00005673903.pdf|https://www.ebi.ac.uk/ena/browser/view/BAAE00000000 PMID:24408034|PMID:16341864 Houiken Niigata-I https://orcid.org/0000-0003-2826-6444 https://nagoya.repo.nii.ac.jp/record/11937/files/KJ00005673903.pdf|https://www.ebi.ac.uk/ena/browser/view/BAAE00000000 PMID:24408034|PMID:16341864 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 +VBO:0017508 HO4C (Japanese rice fish) HO4C Japanese rice fish 240806-181 https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 NCBITaxon:8090 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 VBO:0400000 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 HO4C http://purl.obolibrary.org/obo/vbo#most_common_name https://link.springer.com/article/10.1007/BF00571259|https://nagoya.repo.nii.ac.jp/record/11937/files/KJ00005673903.pdf https://link.springer.com/article/10.1007/BF00571259|https://nagoya.repo.nii.ac.jp/record/11937/files/KJ00005673903.pdf https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 +VBO:0017509 Kaga (Japanese rice fish) Kaga Japanese rice fish 240806-181 https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 NCBITaxon:8090 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 VBO:0400000 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 Kaga http://purl.obolibrary.org/obo/vbo#most_common_name PMID:24408034 PMID:24408034 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 +VBO:0017510 Orange-red (Japanese rice fish) Orange-red Japanese rice fish 240806-181 https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 NCBITaxon:8090 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 VBO:0400000 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 Orange-red http://purl.obolibrary.org/obo/vbo#most_common_name PMID:11226275|PMID:26054930 OR PMID:11226275|PMID:26054930 Himedaka PMID:11226275|PMID:26054930 Orange commercial variety PMID:26054930 PMID:11226275|PMID:26054930 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 +VBO:0017511 SOK (Japanese rice fish) SOK Japanese rice fish 240806-181 https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181 NCBITaxon:8090 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 VBO:0400000 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 SOK http://purl.obolibrary.org/obo/vbo#most_common_name https://nagoya.repo.nii.ac.jp/record/11937/files/KJ00005673903.pdf PMID:24945156 Sokcho PMID:24945156 https://nagoya.repo.nii.ac.jp/record/11937/files/KJ00005673903.pdf PMID:24945156 https://orcid.org/0000-0003-2826-6444|https://orcid.org/0000-0002-5002-8648 \ No newline at end of file diff --git a/src/ontology/imports/cob_import.owl b/src/ontology/imports/cob_import.owl index a039f0d..bdd6e77 100644 --- a/src/ontology/imports/cob_import.owl +++ b/src/ontology/imports/cob_import.owl @@ -7,9 +7,9 @@ Prefix(rdfs:=) Ontology( - + Annotation( ) -Annotation(owl:versionInfo "2024-05-08") +Annotation(owl:versionInfo "2024-08-06") Declaration(Class()) Declaration(Class()) @@ -294,5 +294,7 @@ SubClassOf( "Pier: 'data, information or knowledge'. OR 'representation") AnnotationAssertion(rdfs:label "information") SubClassOf( ObjectSomeValuesFrom( owl:Thing)) +SubClassOf( ObjectSomeValuesFrom(ObjectInverseOf() )) + ) \ No newline at end of file diff --git a/src/ontology/imports/ncbitaxon_import.owl b/src/ontology/imports/ncbitaxon_import.owl index af18ac8..076221f 100644 --- a/src/ontology/imports/ncbitaxon_import.owl +++ b/src/ontology/imports/ncbitaxon_import.owl @@ -7,11 +7,14 @@ Prefix(rdfs:=) Ontology( - -Annotation( ) -Annotation(owl:versionInfo "2024-05-08") + +Annotation( ) +Annotation(owl:versionInfo "2024-08-06") Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -19,25 +22,49 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -56,9 +83,14 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -67,13 +99,41 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -120,6 +180,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -306,6 +367,44 @@ AnnotationAssertion(Annotation( "NCBITaxon:1") AnnotationAssertion(rdfs:label "root") +# Class: (Cricetinae) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion(Annotation( ) "hamsters") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:10026") +AnnotationAssertion(rdfs:label "Cricetinae") +SubClassOf( ) + +# Class: (Mesocricetus) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:10035") +AnnotationAssertion(rdfs:label "Mesocricetus") +SubClassOf( ) + +# Class: (Mesocricetus auratus) + +AnnotationAssertion( ) +AnnotationAssertion( "NCBITaxon:36476") +AnnotationAssertion( "NCBITaxon:36495") +AnnotationAssertion( "NCBITaxon:36496") +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion(Annotation( ) "Syrian golden hamster") +AnnotationAssertion(Annotation( ) "Syrian golden hamsters") +AnnotationAssertion(Annotation( ) "Syrian hamster") +AnnotationAssertion(Annotation( ) "golden hamster") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion(Annotation( ) "Cricetus auratus") +AnnotationAssertion(Annotation( ) "Golden hamsters") +AnnotationAssertion(Annotation( ) "Syrian hamsters") +AnnotationAssertion( "NCBITaxon:10036") +AnnotationAssertion(rdfs:label "Mesocricetus auratus") +SubClassOf( ) + # Class: (Peromyscus) AnnotationAssertion( ) @@ -382,6 +481,54 @@ AnnotationAssertion( "Euteleostomi") SubClassOf( ) +# Class: (Neoteleostei) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:123365") +AnnotationAssertion(rdfs:label "Neoteleostei") +SubClassOf( ) + +# Class: (Eurypterygia) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion(Annotation( ) "Eurypterygii") +AnnotationAssertion( "NCBITaxon:123366") +AnnotationAssertion(rdfs:label "Eurypterygia") +SubClassOf( ) + +# Class: (Ctenosquamata) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:123367") +AnnotationAssertion(rdfs:label "Ctenosquamata") +SubClassOf( ) + +# Class: (Acanthomorphata) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion(Annotation( ) "Acanthomorpha") +AnnotationAssertion( "NCBITaxon:123368") +AnnotationAssertion(rdfs:label "Acanthomorphata") +SubClassOf( ) + +# Class: (Euacanthomorphacea) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion(Annotation( ) "Euacanthomorpha") +AnnotationAssertion( "NCBITaxon:123369") +AnnotationAssertion(rdfs:label "Euacanthomorphacea") +SubClassOf( ) + # Class: (cellular organisms) AnnotationAssertion( "GC_ID:1") @@ -425,6 +572,54 @@ AnnotationAssertion( "Boreoeutheria") SubClassOf( ) +# Class: (Osteoglossocephalai) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:1489341") +AnnotationAssertion(rdfs:label "Osteoglossocephalai") +SubClassOf( ) + +# Class: (Euteleosteomorpha) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:1489388") +AnnotationAssertion(rdfs:label "Euteleosteomorpha") +SubClassOf( ) + +# Class: (Percomorphaceae) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:1489872") +AnnotationAssertion(rdfs:label "Percomorphaceae") +SubClassOf( ) + +# Class: (Ovalentaria) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion(Annotation( ) "Stiassnyiformes") +AnnotationAssertion( "NCBITaxon:1489908") +AnnotationAssertion(rdfs:label "Ovalentaria") +SubClassOf( ) + +# Class: (Atherinomorphae) + +AnnotationAssertion( ) +AnnotationAssertion( "NCBITaxon:32456") +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion(Annotation( ) "Atherinomorpha") +AnnotationAssertion( "NCBITaxon:1489913") +AnnotationAssertion(rdfs:label "Atherinomorphae") +SubClassOf( ) + # Class: (Galloanserae) AnnotationAssertion( ) @@ -436,6 +631,63 @@ AnnotationAssertion( "Galloanserae") SubClassOf( ) +# Class: (Passeroidea) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:175121") +AnnotationAssertion(rdfs:label "Passeroidea") +SubClassOf( ) + +# Class: (Actinopteri) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:186623") +AnnotationAssertion(rdfs:label "Actinopteri") +SubClassOf( ) + +# Class: (Clupeocephala) + +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:186625") +AnnotationAssertion(rdfs:label "Clupeocephala") +SubClassOf( ) + +# Class: (Otophysi) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion(Annotation( ) "Otophysa") +AnnotationAssertion( "NCBITaxon:186626") +AnnotationAssertion(rdfs:label "Otophysi") +SubClassOf( ) + +# Class: (Cypriniphysae) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion(Annotation( ) "Cypriniphysi") +AnnotationAssertion( "NCBITaxon:186627") +AnnotationAssertion(rdfs:label "Cypriniphysae") +SubClassOf( ) + +# Class: (Otomorpha) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion(Annotation( ) "Ostarioclupeomorpha") +AnnotationAssertion(Annotation( ) "Otocephala") +AnnotationAssertion( "NCBITaxon:186634") +AnnotationAssertion(rdfs:label "Otomorpha") +SubClassOf( ) + # Class: (Myomorpha) AnnotationAssertion( ) @@ -493,6 +745,33 @@ AnnotationAssertion( "Apodinae") SubClassOf( ) +# Class: (Cyprininae) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:2743694") +AnnotationAssertion(rdfs:label "Cyprininae") +SubClassOf( ) + +# Class: (Danionidae) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:2743709") +AnnotationAssertion(rdfs:label "Danionidae") +SubClassOf( ) + +# Class: (Danioninae) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:2743711") +AnnotationAssertion(rdfs:label "Danioninae") +SubClassOf( ) + # Class: (Eukaryota) AnnotationAssertion( ) @@ -520,6 +799,24 @@ AnnotationAssertion( "Bovinae") SubClassOf( ) +# Class: (Adrianichthyoidei) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:28781") +AnnotationAssertion(rdfs:label "Adrianichthyoidei") +SubClassOf( ) + +# Class: (Pipoidea) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:30319") +AnnotationAssertion(rdfs:label "Pipoidea") +SubClassOf( ) + # Class: (Bos grunniens) AnnotationAssertion( ) @@ -556,6 +853,16 @@ AnnotationAssertion( "Vicugna") SubClassOf( ) +# Class: (Cyprinoidei) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion(Annotation( ) "Cyprinoidea") +AnnotationAssertion( "NCBITaxon:30727") +AnnotationAssertion(rdfs:label "Cyprinoidei") +SubClassOf( ) + # Class: (Laurasiatheria) AnnotationAssertion( ) @@ -594,6 +901,25 @@ AnnotationAssertion( "Glires") SubClassOf( ) +# Class: (Teleostei) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion(Annotation( ) "teleost fishes") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:32443") +AnnotationAssertion(rdfs:label "Teleostei") +SubClassOf( ) + +# Class: (Ostariophysi) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:32519") +AnnotationAssertion(rdfs:label "Ostariophysi") +SubClassOf( ) + # Class: (Tetrapoda) AnnotationAssertion( ) @@ -778,6 +1104,15 @@ AnnotationAssertion( "Ovis canadensis") SubClassOf( ) +# Class: (Estrildidae) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:37611") +AnnotationAssertion(rdfs:label "Estrildidae") +SubClassOf( ) + # Class: (Feliformia) AnnotationAssertion( ) @@ -796,6 +1131,15 @@ AnnotationAssertion( "Caniformia") SubClassOf( ) +# Class: (Estrildinae) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:40155") +AnnotationAssertion(rdfs:label "Estrildinae") +SubClassOf( ) + # Class: (Mammalia) AnnotationAssertion( ) @@ -807,6 +1151,34 @@ AnnotationAssertion( "Mammalia") SubClassOf( ) +# Class: (Neopterygii) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion(Annotation( ) "Neopterygi") +AnnotationAssertion( "NCBITaxon:41665") +AnnotationAssertion(rdfs:label "Neopterygii") +SubClassOf( ) + +# Class: (Batrachia) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:41666") +AnnotationAssertion(rdfs:label "Batrachia") +SubClassOf( ) + +# Class: (Protacanthopterygii) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:41705") +AnnotationAssertion(rdfs:label "Protacanthopterygii") +SubClassOf( ) + # Class: (Dinosauria) AnnotationAssertion( ) @@ -884,6 +1256,50 @@ AnnotationAssertion( "Meleagridinae") SubClassOf( ) +# Class: (Adrianichthyidae) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:47757") +AnnotationAssertion(rdfs:label "Adrianichthyidae") +SubClassOf( ) + +# Class: (Salmoninae) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion(Annotation( ) "trouts, salmons & chars") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:504568") +AnnotationAssertion(rdfs:label "Salmoninae") +SubClassOf( ) + +# Class: (Taeniopygia) + +AnnotationAssertion( ) +AnnotationAssertion( "NCBITaxon:72051") +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion(Annotation( ) "Taenopygia") +AnnotationAssertion( "NCBITaxon:59728") +AnnotationAssertion(rdfs:label "Taeniopygia") +SubClassOf( ) + +# Class: (Taeniopygia guttata) + +AnnotationAssertion( ) +AnnotationAssertion( "NCBITaxon:40587") +AnnotationAssertion( "NCBITaxon:72052") +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion(Annotation( ) "zebra finch") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion(Annotation( ) "Poephila guttata") +AnnotationAssertion(Annotation( ) "Taenopygia guttata") +AnnotationAssertion( "NCBITaxon:59729") +AnnotationAssertion(rdfs:label "Taeniopygia guttata") +SubClassOf( ) + # Class: (Eumetazoa) AnnotationAssertion( ) @@ -917,6 +1333,16 @@ AnnotationAssertion( "Felis silvestris lybica") SubClassOf( ) +# Class: (Beloniformes) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion(Annotation( ) "medakas, needlefish and others") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:76071") +AnnotationAssertion(rdfs:label "Beloniformes") +SubClassOf( ) + # Class: (Chordata) AnnotationAssertion( ) @@ -951,6 +1377,198 @@ AnnotationAssertion( "Gnathostomata ") SubClassOf( ) +# Class: (Actinopterygii) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion(Annotation( ) "fish") +AnnotationAssertion(Annotation( ) "fishes") +AnnotationAssertion(Annotation( ) "ray-finned fishes") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion(Annotation( ) "Actinopterygi") +AnnotationAssertion(Annotation( ) "Osteichthyes") +AnnotationAssertion(Annotation( ) "bony fishes") +AnnotationAssertion( "NCBITaxon:7898") +AnnotationAssertion(rdfs:label "Actinopterygii") +SubClassOf( ) + +# Class: (Cypriniformes) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion(Annotation( ) "carps and others") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:7952") +AnnotationAssertion(rdfs:label "Cypriniformes") +SubClassOf( ) + +# Class: (Cyprinidae) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:7953") +AnnotationAssertion(rdfs:label "Cyprinidae") +SubClassOf( ) + +# Class: (Danio) + +AnnotationAssertion( ) +AnnotationAssertion( "NCBITaxon:46777") +AnnotationAssertion( "NCBITaxon:487617") +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion(Annotation( ) "Brachydanio") +AnnotationAssertion(Annotation( ) "Celestichthys") +AnnotationAssertion( "NCBITaxon:7954") +AnnotationAssertion(rdfs:label "Danio") +SubClassOf( ) + +# Class: (Danio rerio) + +AnnotationAssertion( ) +AnnotationAssertion( "NCBITaxon:27702") +AnnotationAssertion( "NCBITaxon:37966") +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion(Annotation( ) "leopard danio") +AnnotationAssertion(Annotation( ) "zebra danio") +AnnotationAssertion(Annotation( ) "zebra fish") +AnnotationAssertion(Annotation( ) "zebrafish") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion(Annotation( ) "Brachydanio rerio") +AnnotationAssertion(Annotation( ) "Brachydanio rerio frankei") +AnnotationAssertion(Annotation( ) "Cyprinus rerio") +AnnotationAssertion(Annotation( ) "Danio frankei") +AnnotationAssertion(Annotation( ) "Danio rerio frankei") +AnnotationAssertion( "NCBITaxon:7955") +AnnotationAssertion(rdfs:label "Danio rerio") +SubClassOf( ) + +# Class: (Carassius) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:7956") +AnnotationAssertion(rdfs:label "Carassius") +SubClassOf( ) + +# Class: (Carassius auratus) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion(Annotation( ) "goldfish") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion(Annotation( ) "Carassius carassius auratus") +AnnotationAssertion(Annotation( ) "Cyprinus auratus") +AnnotationAssertion( "NCBITaxon:7957") +AnnotationAssertion(rdfs:label "Carassius auratus") +SubClassOf( ) + +# Class: (Cyprinus) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:7961") +AnnotationAssertion(rdfs:label "Cyprinus") +SubClassOf( ) + +# Class: (Cyprinus carpio) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion(Annotation( ) "carp") +AnnotationAssertion(Annotation( ) "common carp") +AnnotationAssertion(Annotation( ) "fancy carp") +AnnotationAssertion(Annotation( ) "koi") +AnnotationAssertion(Annotation( ) "mirror carp") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:7962") +AnnotationAssertion(rdfs:label "Cyprinus carpio") +SubClassOf( ) + +# Class: (Salmoniformes) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion(Annotation( ) "salmons and trouts") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:8006") +AnnotationAssertion(rdfs:label "Salmoniformes") +SubClassOf( ) + +# Class: (Salmonidae) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "PMID:15062801") +AnnotationAssertion(Annotation( ) "salmonids") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:8015") +AnnotationAssertion(rdfs:label "Salmonidae") +SubClassOf( ) + +# Class: (Oncorhynchus) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion(Annotation( ) "Parasalmo") +AnnotationAssertion( "NCBITaxon:8016") +AnnotationAssertion(rdfs:label "Oncorhynchus") +SubClassOf( ) + +# Class: (Oncorhynchus mykiss) + +AnnotationAssertion( ) +AnnotationAssertion( "NCBITaxon:1311475") +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion(Annotation( ) "rainbow trout") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion(Annotation( ) "Oncorhynchus nerka mykiss") +AnnotationAssertion(Annotation( ) "Parasalmo mykiss") +AnnotationAssertion(Annotation( ) "Salmo mykiss") +AnnotationAssertion( "NCBITaxon:8022") +AnnotationAssertion(rdfs:label "Oncorhynchus mykiss") +SubClassOf( ) + +# Class: (Oryziinae) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion(Annotation( ) "medakas") +AnnotationAssertion(Annotation( ) "ricefishes") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion(Annotation( ) "Oryziatinae") +AnnotationAssertion( "NCBITaxon:8088") +AnnotationAssertion(rdfs:label "Oryziinae") +SubClassOf( ) + +# Class: (Oryzias) + +AnnotationAssertion( ) +AnnotationAssertion( "NCBITaxon:123687") +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion(Annotation( ) "Xenopoecilus") +AnnotationAssertion( "NCBITaxon:8089") +AnnotationAssertion(rdfs:label "Oryzias") +SubClassOf( ) + +# Class: (Oryzias latipes) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion(Annotation( ) "Japanese medaka") +AnnotationAssertion(Annotation( ) "Japanese rice fish") +AnnotationAssertion(Annotation( ) "medaka") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion(Annotation( ) "Poecilia latipes") +AnnotationAssertion( "NCBITaxon:8090") +AnnotationAssertion(rdfs:label "Oryzias latipes") +SubClassOf( ) + # Class: (Sarcopterygii) AnnotationAssertion( ) @@ -960,6 +1578,91 @@ AnnotationAssertion( "Sarcopterygii") SubClassOf( ) +# Class: (Amphibia) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion(Annotation( ) "amphibians") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion(Annotation( ) "amphibians") +AnnotationAssertion( "NCBITaxon:8292") +AnnotationAssertion(rdfs:label "Amphibia") +SubClassOf( ) + +# Class: (Anura) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion(Annotation( ) "anurans") +AnnotationAssertion(Annotation( ) "frogs") +AnnotationAssertion(Annotation( ) "frogs and toads") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion(Annotation( ) "Salientia") +AnnotationAssertion(Annotation( ) "frogs & toads") +AnnotationAssertion( "NCBITaxon:8342") +AnnotationAssertion(rdfs:label "Anura") +SubClassOf( ) + +# Class: (Pipidae) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "PMID:2385174") +AnnotationAssertion(Annotation( ) "pipid frogs") +AnnotationAssertion(Annotation( ) "tongueless frogs") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:8352") +AnnotationAssertion(rdfs:label "Pipidae") +SubClassOf( ) + +# Class: (Xenopus ) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "PMID:2385174") +AnnotationAssertion(Annotation( ) "Xenopus") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:8353") +AnnotationAssertion(rdfs:label "Xenopus ") +SubClassOf( ) + +# Class: (Xenopodinae) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "PMID:2385174") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion(Annotation( ) "Siluraninae") +AnnotationAssertion( "NCBITaxon:8360") +AnnotationAssertion(rdfs:label "Xenopodinae") +SubClassOf( ) + +# Class: (Silurana) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "PMID:2385174") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion(Annotation( ) "Xenopus tropicalis group") +AnnotationAssertion( "NCBITaxon:8363") +AnnotationAssertion(rdfs:label "Silurana") +SubClassOf( ) + +# Class: (Xenopus tropicalis) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "PMID:2385174") +AnnotationAssertion(Annotation( ) "tropical clawed frog") +AnnotationAssertion(Annotation( ) "western clawed frog") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion(Annotation( ) "Silurana tropicalis") +AnnotationAssertion(Annotation( ) "Xenopus (Silurana) tropicalis") +AnnotationAssertion(Annotation( ) "Xenopus laevis tropicalis") +AnnotationAssertion( "NCBITaxon:8364") +AnnotationAssertion(rdfs:label "Xenopus tropicalis") +SubClassOf( ) + # Class: (Sauropsida) AnnotationAssertion( ) @@ -1451,6 +2154,16 @@ AnnotationAssertion( "Meleagris gallopavo") SubClassOf( ) +# Class: (Passeriformes) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion(Annotation( ) "song birds") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:9126") +AnnotationAssertion(rdfs:label "Passeriformes") +SubClassOf( ) + # Class: (Artiodactyla) AnnotationAssertion( ) diff --git a/src/ontology/imports/ncbitaxon_terms.txt b/src/ontology/imports/ncbitaxon_terms.txt index 2a5050e..7d1ea4d 100644 --- a/src/ontology/imports/ncbitaxon_terms.txt +++ b/src/ontology/imports/ncbitaxon_terms.txt @@ -38,4 +38,14 @@ http://purl.obolibrary.org/obo/NCBITaxon_10042 http://purl.obolibrary.org/obo/NCBITaxon_37174 http://purl.obolibrary.org/obo/NCBITaxon_9685 http://purl.obolibrary.org/obo/NCBITaxon_61376 -http://purl.obolibrary.org/obo/NCBITaxon_2576912 \ No newline at end of file +http://purl.obolibrary.org/obo/NCBITaxon_2576912 +http://purl.obolibrary.org/obo/NCBITaxon_59729 +http://purl.obolibrary.org/obo/NCBITaxon_10036 +http://purl.obolibrary.org/obo/NCBITaxon_186623 +http://purl.obolibrary.org/obo/NCBITaxon_8022 +http://purl.obolibrary.org/obo/NCBITaxon_7955 +http://purl.obolibrary.org/obo/NCBITaxon_7962 +http://purl.obolibrary.org/obo/NCBITaxon_7957 +http://purl.obolibrary.org/obo/NCBITaxon_8090 +http://purl.obolibrary.org/obo/NCBITaxon_8353 +http://purl.obolibrary.org/obo/NCBITaxon_8364 \ No newline at end of file diff --git a/src/ontology/imports/omo_import.owl b/src/ontology/imports/omo_import.owl index 93db6f7..07a56dd 100644 --- a/src/ontology/imports/omo_import.owl +++ b/src/ontology/imports/omo_import.owl @@ -7,9 +7,9 @@ Prefix(rdfs:=) Ontology( - + Annotation( ) -Annotation(owl:versionInfo "2024-05-08") +Annotation(owl:versionInfo "2024-08-06") Declaration(Class()) Declaration(Class()) diff --git a/src/ontology/imports/ro_import.owl b/src/ontology/imports/ro_import.owl index 8f6941a..5d8a01f 100644 --- a/src/ontology/imports/ro_import.owl +++ b/src/ontology/imports/ro_import.owl @@ -7,9 +7,9 @@ Prefix(rdfs:=) Ontology( - + Annotation( ) -Annotation(owl:versionInfo "2024-05-08") +Annotation(owl:versionInfo "2024-08-06") Declaration(Class()) Declaration(Class()) diff --git a/src/ontology/imports/wikidata_import.owl b/src/ontology/imports/wikidata_import.owl index 1bad472..7a5b33e 100644 --- a/src/ontology/imports/wikidata_import.owl +++ b/src/ontology/imports/wikidata_import.owl @@ -7,12 +7,12 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> - - 2024-05-08 + + 2024-08-06 - +