From cf6dcc219ee9a017025437de06cf5d9e74529b0a Mon Sep 17 00:00:00 2001 From: katiermullen <102704401+katiermullen@users.noreply.github.com> Date: Tue, 12 Nov 2024 19:59:27 -0700 Subject: [PATCH] Merge MONDO:0020175 and MONDO:0021313 Closes #7698 Merge MONDO:0020175 malignant tumor of palpebral epidermis into MONDO:0021313 eyelid cancer. --- src/ontology/mondo-edit.obo | 39 +++++++++++++++++-------------------- 1 file changed, 18 insertions(+), 21 deletions(-) diff --git a/src/ontology/mondo-edit.obo b/src/ontology/mondo-edit.obo index 259adaefb9..4b4f98e9a8 100644 --- a/src/ontology/mondo-edit.obo +++ b/src/ontology/mondo-edit.obo @@ -144073,7 +144073,7 @@ is_a: MONDO:0019755 ! developmental defect during embryogenesis is_a: MONDO:0021147 ! disorder of development or morphogenesis is_a: MONDO:0042983 {source="NCIT:C2892", source="Wikipedia:Phakomatosis"} ! neurocutaneous syndrome relationship: curated_content_resource https://search.clinicalgenome.org/kb/conditions/MONDO:0007187 {source="MONDO:CLINGEN"} -relationship: disease_has_feature MONDO:0020175 {source="Orphanet:377"} ! malignant tumor of palpebral epidermis +relationship: disease_has_feature MONDO:0021313 {source="Orphanet:377"} ! eyelid cancer relationship: has_characteristic HP:0000006 {source="MONDO:HPOA", source="OMIM:109400", source="Orphanet:377"} ! Autosomal dominant inheritance relationship: has_characteristic MONDO:0021152 {source="OMIMPS:109400"} ! inherited @@ -234151,7 +234151,7 @@ xref: UMLS:C0346104 {source="MEDGEN:87539", source="MONDO:equivalentTo", source= is_a: MONDO:0005093 {source="MONDO:0019546-obsoleted"} ! skin disorder relationship: excluded_subClassOf MONDO:0015950 {source="Orphanet:113", source="https://orcid.org/0000-0001-5208-3432"} ! obsolete inherited skin tumor relationship: excluded_subClassOf MONDO:0019300 {source="Orphanet:113", source="https://orcid.org/0000-0001-5208-3432"} ! obsolete rare skin tumor or hamartoma -relationship: excluded_subClassOf MONDO:0020175 {source="Orphanet:113", source="https://orcid.org/0000-0001-5208-3432"} ! malignant tumor of palpebral epidermis +relationship: excluded_subClassOf MONDO:0020175 {source="Orphanet:113", source="https://orcid.org/0000-0001-5208-3432"} ! obsolete malignant tumor of palpebral epidermis relationship: excluded_subClassOf MONDO:0020188 {source="Orphanet:113", source="https://orcid.org/0000-0001-5208-3432"} ! obsolete congenital absence of the eyebrow/eyelashes property_value: IAO:0000233 "https://github.com/monarch-initiative/mondo/issues/4521" xsd:anyURI @@ -267781,7 +267781,7 @@ synonym: "Hurthle cell carcinoma of thyroid gland" EXACT [NCIT:C4946] synonym: "Hurthle cell thyroid cancer" RELATED [GARD:0009428] synonym: "Hurthle cell thyroid gland carcinoma" EXACT [NCIT:C4946] synonym: "Hurthle cell thyroid neoplasia" RELATED [OMIM:607464] -synonym: "oncocytic carcinoma of the thyroid" EXACT [NCIT:C4946, DOID:8161] +synonym: "oncocytic carcinoma of the thyroid" EXACT [DOID:8161, NCIT:C4946] synonym: "oncocytic carcinoma of thyroid" EXACT [NCIT:C4946] synonym: "thyroid cancer, follicular, Hurthle cell type" RELATED [GARD:0009428] synonym: "thyroid cancer, Hurthle cell" RELATED [GARD:0009428] @@ -454714,22 +454714,11 @@ is_obsolete: true [Term] id: MONDO:0020175 -name: malignant tumor of palpebral epidermis -def: "A cancer that involves the skin of eyelid." [MONDO:patterns/location] -comment: Reason of obsoletion: duplicate. This will be merged with MONDO:0021313 eyelid cancer -subset: disease_grouping -subset: obsoletion_candidate -synonym: "cancer of skin of eyelid" EXACT [MONDO:patterns/cancer] -synonym: "malignant neoplasm of skin of eyelid" EXACT [MONDO:patterns/cancer] -synonym: "malignant skin of eyelid neoplasm" EXACT [MONDO:patterns/cancer] -synonym: "skin of eyelid cancer" EXACT [MONDO:patterns/location] -xref: Orphanet:98584 {source="MONDO:equivalentObsolete"} -xref: SCTID:423425006 {source="MONDO:equivalentTo"} -is_a: MONDO:0020172 {source="MONDO:Redundant", source="Orphanet:98584"} ! palpebral epidermal tumor -intersection_of: MONDO:0004992 ! cancer -intersection_of: disease_has_location UBERON:0001457 ! skin of eyelid +name: obsolete malignant tumor of palpebral epidermis +property_value: IAO:0000231 MONDO:TermsMerged property_value: IAO:0000233 "https://github.com/monarch-initiative/mondo/issues/7698" xsd:anyURI -property_value: IAO:0006012 "2024-08-01" xsd:string +is_obsolete: true +replaced_by: MONDO:0021313 [Term] id: MONDO:0020176 @@ -473113,27 +473102,35 @@ intersection_of: disease_has_location UBERON:0001235 ! adrenal cortex id: MONDO:0021313 name: eyelid cancer def: "A cancer that involves the eyelid." [MONDO:patterns/location] +subset: disease_grouping subset: otar {source="MONDO:OTAR"} synonym: "cancer of eyelid" EXACT [MONDO:patterns/cancer] +synonym: "cancer of skin of eyelid" EXACT [MONDO:patterns/cancer] synonym: "eyelid cancer" EXACT [MONDO:patterns/location] synonym: "malignant eyelid neoplasm" EXACT [MONDO:patterns/cancer, NCIT:C6786] synonym: "malignant eyelid tumor" EXACT [NCIT:C6786] synonym: "malignant eyelid tumour" EXACT OMO:0003005 [] synonym: "malignant neoplasm of eyelid" EXACT [MONDO:patterns/cancer, NCIT:C6786] +synonym: "malignant neoplasm of skin of eyelid" EXACT [MONDO:patterns/cancer] synonym: "malignant neoplasm of the eyelid" EXACT [NCIT:C6786] +synonym: "malignant skin of eyelid neoplasm" EXACT [MONDO:patterns/cancer] synonym: "malignant tumor of eyelid" EXACT [NCIT:C6786] -synonym: "malignant tumor of the eyelid" EXACT [NCIT:C6786] -synonym: "malignant tumour of eyelid" EXACT OMO:0003005 [] +synonym: "malignant tumor of palpebral epidermis" EXACT [MONDO:0020175] synonym: "malignant tumour of the eyelid" EXACT OMO:0003005 [] +synonym: "skin of eyelid cancer" EXACT [MONDO:patterns/location] xref: ICD9:173.1 {source="MONDO:relatedTo", source="MONDO:i2s"} xref: MEDGEN:501131 {source="MONDO:equivalentTo", source="MONDO:MEDGEN"} xref: NCIT:C6786 {source="MONDO:equivalentTo"} -xref: SCTID:231829006 {source="MONDO:equivalentTo"} +xref: Orphanet:98584 {source="MONDO:equivalentObsolete"} +xref: SCTID:231829006 {source="MONDO:equivalentTo", source="MONDO:preferredExternal"} +xref: SCTID:423425006 {source="MONDO:equivalentTo"} xref: UMLS:C1828015 {source="MONDO:equivalentTo", source="MONDO:MEDGEN", source="MEDGEN:501131"} is_a: MONDO:0002235 {source="MONDO:Redundant", source="NCIT:C6786"} ! eyelid neoplasm is_a: MONDO:0002236 {source="MONDO:Redundant", source="NCIT:C6786"} ! ocular cancer +is_a: MONDO:0020172 {source="MONDO:Redundant", source="Orphanet:98584"} ! palpebral epidermal tumor intersection_of: MONDO:0004992 ! cancer intersection_of: disease_has_location UBERON:0001711 ! eyelid +property_value: IAO:0000233 "https://github.com/monarch-initiative/mondo/issues/7698" xsd:anyURI [Term] id: MONDO:0021315