diff --git a/docs/editors-guide/patterns/index.md b/docs/editors-guide/patterns/index.md index 8808822db0..637f6176d8 100644 --- a/docs/editors-guide/patterns/index.md +++ b/docs/editors-guide/patterns/index.md @@ -92,8 +92,8 @@ | [severe](severe/) | Pattern for describing the severity of a disease, in this case, a severe form of the disease. Here severe means having a high degree of severity. This may correspond with specific genetic mutations (or homozygous or heterozygous forms).
Examples: [severe ichthyosis vulgaris](http://purl.obolibrary.org/obo/MONDO_0100475) | | [small cell carcinoma disease has location X](small_cell_carcinoma/) | This is auto-generated. Add your description here
Examples: [cervical small cell carcinoma](http://purl.obolibrary.org/obo/MONDO_0006142), [pancreatic small cell neuroendocrine carcinoma](http://purl.obolibrary.org/obo/MONDO_0006348), [ureter small cell carcinoma](http://purl.obolibrary.org/obo/MONDO_0006482) (16 total) | | [specific_infectious_disease_by_location](specific_infectious_disease_by_location/) |
TODO | -| [specific_inflammatory_disease_by_site](specific_infectious_disease_by_agent/) |
as for inflammatory_disease_by_site, but refining a specific disease | | [specific_inflammatory_disease_by_site](specific_inflammatory_disease_by_site/) |
as for inflammatory_disease_by_site, but refining a specific disease | +| [specific_inflammatory_disease_by_site](specific_infectious_disease_by_agent/) |
as for inflammatory_disease_by_site, but refining a specific disease | | [squamous cell carcinoma disease has location X](squamous_cell_carcinoma/) | This is auto-generated. Add your description here
Examples: [cervical squamous cell carcinoma](http://purl.obolibrary.org/obo/MONDO_0006143), [skin squamous cell carcinoma](http://purl.obolibrary.org/obo/MONDO_0002529), [ureter squamous cell carcinoma](http://purl.obolibrary.org/obo/MONDO_0003502) (63 total) | | [substance_abuse](substance_abuse/) | A substance abuse that specifies a specific environmental stimulus such as alcohol, cocaine, etc. Examples: [alcohol abuse](http://purl.obolibrary.org/obo/MONDO_0002046), [cocaine abuse](http://purl.obolibrary.org/obo/MONDO_0004456) | | [susceptibility_by_gene](susceptibility_by_gene/) | This pattern should be used for terms in which a gene dysfunction causes a predisposition or susceptibility towards developing a specific disease. This pattern is a sub-pattern of [inherited_susceptibility.yaml](https://github.com/monarch-initiative/mondo/blob/master/src/patterns/dosdp-patterns/inherited_susceptibility.yaml)
Examples - [autism, susceptibility to, X-linked 5](http://purl.obolibrary.org/obo/MONDO_0010449), [bulimia nervosa, susceptibility to, 2](http://purl.obolibrary.org/obo/MONDO_0012461), [nephrolithiasis susceptibility caused by SLC26A1](http://purl.obolibrary.org/obo/MONDO_0020722)' | diff --git a/src/patterns/pattern-merged.owl b/src/patterns/pattern-merged.owl index d304eeda81..2e248fa2e4 100644 --- a/src/patterns/pattern-merged.owl +++ b/src/patterns/pattern-merged.owl @@ -10,7 +10,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + diff --git a/src/patterns/pattern-with-imports.owl b/src/patterns/pattern-with-imports.owl index 6594ad21af..784cb0f4a7 100644 --- a/src/patterns/pattern-with-imports.owl +++ b/src/patterns/pattern-with-imports.owl @@ -10,7 +10,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + diff --git a/src/patterns/pattern.owl b/src/patterns/pattern.owl index e345b2bfc3..17542fa84e 100644 --- a/src/patterns/pattern.owl +++ b/src/patterns/pattern.owl @@ -10,7 +10,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - +