ontobot.yaml

name: Create new pull request

on:
  workflow_dispatch:
  issues:
    types: [ opened, edited ]

jobs:
  build:
    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        python-version: ["3.9"]
        os: [ ubuntu-latest ]

    steps:
      - uses: actions/checkout@v3
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v3
        with:
          python-version: ${{ matrix.python-version }}

      - name: Return issue number
        id: gh-script-issue
        uses: actions/github-script@v6
        with:
          # github-token: ${{ secrets.GH_TOKEN }}
          script: |
            const issue_number = context.issue.number
            const repo = context.repo.owner+"/"+context.repo.repo
            return issue_number
      
      - name: Return repository name
        id: gh-script-repo
        uses: actions/github-script@v6
        with:
          # github-token: ${{ secrets.GH_TOKEN }}
          script: |
            const repo = context.repo.owner+"/"+context.repo.repo
            return repo

      - name: Set branch name
        id: vars
        run: |
          echo "resource=src/ontology/mondo-edit.obo" >> $GITHUB_ENV
          echo "branch-name=ochange_automation_"${{ steps.gh-script-issue.outputs.result }} >> $GITHUB_ENV
      
      - name: Install dependencies
        run: |
          pip install ontobot-change-agent

      - name: Run ochange
        id: ochange
        run: |
          ochange process-issue ${{ env.resource }} \
          -r ${{ steps.gh-script-repo.outputs.result }} \
          -n ${{ steps.gh-script-issue.outputs.result }} \
          -g ${{ secrets.GH_TOKEN }} \
          -p MONDO

      - name: Create Pull Request
        uses: peter-evans/create-pull-request@v4
        if: ${{ env.PR_TITLE}}
        with:
          branch-suffix: short-commit-hash
          labels: Automated
          author: ${{ env.ISSUE_CREATOR }} <${{ env.ISSUE_CREATOR }}@users.noreply.github.com>
          committer: ${{ env.ISSUE_CREATOR }} <${{ env.ISSUE_CREATOR }}@users.noreply.github.com>
          body: ${{ env.PR_BODY }}
          title: ${{ env.PR_TITLE }}
          base: ${{ github.head_ref }}
          branch: ${{ env.branch-name }}
          # token: ${{ secrets.GH_TOKEN }}