From e53a10d959aa0c0ce4220b334cbb60053c35ebdb Mon Sep 17 00:00:00 2001 From: caufieldjh Date: Mon, 2 Dec 2024 16:23:00 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20monarch-?= =?UTF-8?q?initiative/curategpt@00e916ec9df10378c289386cc9e6e44c174b514a?= =?UTF-8?q?=20=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- curategpt.agents.html | 18 ++++++++++++++++++ curategpt.evaluation.html | 4 ++-- curategpt.html | 3 +++ curategpt.store.html | 12 ++++++++++++ genindex.html | 10 ++++++++-- objects.inv | Bin 9454 -> 9469 bytes searchindex.js | 2 +- 7 files changed, 44 insertions(+), 5 deletions(-) diff --git a/curategpt.agents.html b/curategpt.agents.html index 57160db..bd7dc9d 100644 --- a/curategpt.agents.html +++ b/curategpt.agents.html @@ -238,6 +238,7 @@
  • HuggingFaceAgent.api
  • HuggingFaceAgent.cached_download()
  • HuggingFaceAgent.upload()
    • +
  • HuggingFaceAgent.upload_duckdb()
    • @@ -1402,6 +1403,23 @@

    Submodules +
    +upload_duckdb(objects, metadata, repo_id, private=False, **kwargs)
    +

    Upload an entire collection to a Hugging Face repository.

    +
    +
    Parameters:
    +
      +

    • objects – The objects to upload.

      • +

    • metadata – The metadata associated with the collection.

      • +

    • repo_id – The repository ID on Hugging Face.

      • +

    • private – Whether the repository should be private.

      • +

    • kwargs – Additional arguments such as batch size or metadata options.

      • +
    +
    +
    +
    + diff --git a/curategpt.evaluation.html b/curategpt.evaluation.html index 0cba93c..713f3f3 100644 --- a/curategpt.evaluation.html +++ b/curategpt.evaluation.html @@ -542,7 +542,7 @@

    Submodules
    -model_fields: ClassVar[Dict[str, FieldInfo]] = {'additional_collections': FieldInfo(annotation=Union[List[str], NoneType], required=False, default=None), 'agent': FieldInfo(annotation=Union[str, NoneType], required=False, default='dae'), 'embedding_model_name': FieldInfo(annotation=str, required=False, default='openai:'), 'executed_on': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'extractor': FieldInfo(annotation=Union[str, NoneType], required=False, default='BasicExtractor'), 'fields_to_mask': FieldInfo(annotation=Union[List[str], NoneType], required=False, default=None), 'fields_to_predict': FieldInfo(annotation=Union[List[str], NoneType], required=False, default=None), 'generate_background': FieldInfo(annotation=bool, required=False, default=False), 'method': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'model_name': FieldInfo(annotation=str, required=False, default='gpt-3.5-turbo'), 'num_testing': FieldInfo(annotation=int, required=False, default=None), 'num_training': FieldInfo(annotation=int, required=False, default=None), 'num_validation': FieldInfo(annotation=int, required=False, default=0), 'report_path': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'results': FieldInfo(annotation=Union[ClassificationMetrics, NoneType], required=False, default=None), 'source_collection': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'source_db_path': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'stratified_collection': FieldInfo(annotation=Union[StratifiedCollection, NoneType], required=False, default=None), 'target_db_path': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'task_finished': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'task_started': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'working_directory': FieldInfo(annotation=Union[str, Path, NoneType], required=False, default=None)}
    +model_fields: ClassVar[Dict[str, FieldInfo]] = {'additional_collections': FieldInfo(annotation=Union[List[str], NoneType], required=False, default=None), 'agent': FieldInfo(annotation=Union[str, NoneType], required=False, default='dae'), 'embedding_model_name': FieldInfo(annotation=str, required=False, default='openai:'), 'executed_on': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'extractor': FieldInfo(annotation=Union[str, NoneType], required=False, default='BasicExtractor'), 'fields_to_mask': FieldInfo(annotation=Union[List[str], NoneType], required=False, default=None), 'fields_to_predict': FieldInfo(annotation=Union[List[str], NoneType], required=False, default=None), 'generate_background': FieldInfo(annotation=bool, required=False, default=False), 'method': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'model_name': FieldInfo(annotation=str, required=False, default='gpt-3.5-turbo'), 'num_testing': FieldInfo(annotation=int, required=False, default=None), 'num_training': FieldInfo(annotation=int, required=False, default=None), 'num_validation': FieldInfo(annotation=int, required=False, default=0), 'report_path': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'results': FieldInfo(annotation=Union[ClassificationMetrics, NoneType], required=False, default=None), 'source_collection': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'source_db_path': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'stratified_collection': FieldInfo(annotation=Union[StratifiedCollection, NoneType], required=False, default=None), 'target_db_path': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'task_finished': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'task_started': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'working_directory': FieldInfo(annotation=Union[Path, str, NoneType], required=False, default=None)}

    Metadata about the fields defined on the model, mapping of field names to [FieldInfo][pydantic.fields.FieldInfo] objects.

    This replaces Model.__fields__ from Pydantic V1.

    @@ -610,7 +610,7 @@

    Submodules
    -working_directory: Union[str, Path, None]
    +working_directory: Union[Path, str, None]

    diff --git a/curategpt.html b/curategpt.html index f389478..f5b8064 100644 --- a/curategpt.html +++ b/curategpt.html @@ -328,6 +328,7 @@

    SubpackagesHuggingFaceAgent.api
  • HuggingFaceAgent.cached_download()
  • HuggingFaceAgent.upload()
    • +
  • HuggingFaceAgent.upload_duckdb()
    • @@ -847,6 +848,7 @@

    SubpackagesDuckDBAdapter.id_to_object
  • DuckDBAdapter.identifier_field()
  • DuckDBAdapter.insert()
    • +
  • DuckDBAdapter.insert_from_huggingface()
  • DuckDBAdapter.kill_process()
  • DuckDBAdapter.list_collection_names()
  • DuckDBAdapter.lookup()
    • @@ -1050,6 +1052,7 @@

    SubpackagesDuckDBAdapter.id_to_object
  • DuckDBAdapter.identifier_field()
  • DuckDBAdapter.insert()
    • +
  • DuckDBAdapter.insert_from_huggingface()
  • DuckDBAdapter.kill_process()
  • DuckDBAdapter.list_collection_names()
  • DuckDBAdapter.lookup()
    • diff --git a/curategpt.store.html b/curategpt.store.html index 3a68130..749cf01 100644 --- a/curategpt.store.html +++ b/curategpt.store.html @@ -152,6 +152,7 @@
  • DuckDBAdapter.id_to_object
  • DuckDBAdapter.identifier_field()
  • DuckDBAdapter.insert()
    • +
  • DuckDBAdapter.insert_from_huggingface()
  • DuckDBAdapter.kill_process()
  • DuckDBAdapter.list_collection_names()
  • DuckDBAdapter.lookup()
    • @@ -355,6 +356,7 @@
  • DuckDBAdapter.id_to_object
  • DuckDBAdapter.identifier_field()
  • DuckDBAdapter.insert()
    • +
  • DuckDBAdapter.insert_from_huggingface()
  • DuckDBAdapter.kill_process()
  • DuckDBAdapter.list_collection_names()
  • DuckDBAdapter.lookup()
    • @@ -1588,6 +1590,11 @@

    Parameters :return:

    +
    +
    +insert_from_huggingface(objs, collection=None, batch_size=None, text_field=None, venomx=None, object_type=None, distance=None, vec_dimension=None, method='insert', **kwargs)
    +
    +
    static kill_process(pid)
    @@ -3580,6 +3587,11 @@

    Parameters :return:

    +
    +
    +insert_from_huggingface(objs, collection=None, batch_size=None, text_field=None, venomx=None, object_type=None, distance=None, vec_dimension=None, method='insert', **kwargs)
    +
    +
    static kill_process(pid)
    diff --git a/genindex.html b/genindex.html index 2897162..4f955e4 100644 --- a/genindex.html +++ b/genindex.html @@ -2048,10 +2048,10 @@

    I

  • ids (curategpt.store.duckdb_result.DuckDBSearchResult attribute)
    • - - +
  • is_fetch_full_text (curategpt.wrappers.literature.pubmed_wrapper.PubmedWrapper attribute) @@ -3974,6 +3978,8 @@

    U

  • upload() (curategpt.agents.huggingface_agent.HuggingFaceAgent method) +
    • +
  • upload_duckdb() (curategpt.agents.huggingface_agent.HuggingFaceAgent method)
  • upsert() (curategpt.ChromaDBAdapter method) diff --git a/objects.inv b/objects.inv index 6710ce0efa97b15ef52e6148dfbcdbc911fa372c..b1073611aeabb69afa5df03201084ed961478cd6 100644 GIT binary patch delta 4395 zcmV+`5!CMPN&QK%g9v}&1rWwf^cwHBa{9MIQ5w!nYj`blV_R9&LXV8}6ks@{6DKNp zx6>mm>{(XsVx4wb8NPVcP?Z~EuGR%HU#r$o;4fKg#6hoIYjhC@!i$urp&?>E)loF~ z`uuqFEqu87b^9Ax$%EV9A7AdMA>Z!5f4_Ua`}r&U{`~kr$N7JG^ZfkyCv|O}?|#4e zbw~bWUTz-l!kZU5z#l*V2FpdUR{x^VRbCziUK_CLHB{M{U9QAT4+DoC7s@r)Ra=(X3qQxzCZ4~b11KZwQ)YZXslj`j^ zqm#ma^fO)faI2RB{C6!xWF&qWvtaV0YbD$cEHMX$>XW2xEf-sUW-o@&7k?OxaQ2Cuy$ zt0Xatc`jlFkbROWkOnhe-%Yxflg)IXC7R4;13c%YXxY9thH}gLofEYSJ4|A#v5oD_ z#c)K4aQZc%JqU~OY zcT>c5Pq`#)k`4@u7H}Z_?`x(F7c%L)5LU#JsO>1Cszp>GJ?0BldHW9~Kd4g6vX(t( zu~%*_c>8zvu|zV&cff-n-hV`e+>y9Zf>6+ ziEh^t?%pfz&%65{zx}%VMn$|;&u847^x^C&upitaC}5FN&@E`Bpzi+`8upDKp|V7V zF3MP+%pse{aSgv+DO)7PV(n zQkTuA_34)Fxl2Dbwd}{7-b3`D;QP(*FL&Y3yB{~d?*D%0wURyi>G9>>Kl|77AD>n2 z7EN92ms*~w_K%bC@HD55-Kv&2ejSpw1eE?r1O9{>n`ZwAkTtJrwF0Q(^=EOd-c*03 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