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Change.log
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commit 3f78ad5617e0e7b8f5f8aba585f0de8d65406536
Author: jfsanchez <[email protected]>
Date: Thu Jan 24 13:07:38 2019 +0100
Discard List:uniq module
commit a2b948a01d6083fdd55229033a2e8b66c5457cda
Author: Jose F. Sanchez <[email protected]>
Date: Tue Nov 13 13:24:47 2018 +0100
Update and fixed MSA
commit c3f6afd82a80ad10465943f9a3cdadd4d7356a83
Author: Jose F. Sanchez <[email protected]>
Date: Mon Nov 12 10:16:12 2018 +0100
Updates
commit 120dde8bebf5728aee69bec1a2d491a666aeb812
Author: jfsanchezherrero <[email protected]>
Date: Sun Nov 11 02:40:14 2018 +0100
Bug fixes in situ
commit 740fcb3bfbcc5d995370de7d01f3a20f20aeb2bc
Author: jfsanchezherrero <[email protected]>
Date: Sat Nov 10 17:20:00 2018 +0100
Fixed important bug GeneratePileup
commit cb02f3086d8d93ae9fd85fb543dfaae2bc940f3c
Author: Jose F. Sanchez <[email protected]>
Date: Fri Nov 9 15:48:24 2018 +0100
Fixed
commit e831b76c3e46ccfc30fb8f961f38069d0877f86c
Author: Jose F. Sanchez <[email protected]>
Date: Fri Nov 9 15:32:43 2018 +0100
Factorial
commit ba0dacb30f3eb2697a8484639b89edf38fb42ff6
Author: Jose F. Sanchez <[email protected]>
Date: Fri Nov 9 15:27:41 2018 +0100
Factorial
commit 60eefef29afcf8bf3e9f507378a82fd89aa00508
Author: Jose F. Sanchez <[email protected]>
Date: Fri Nov 9 15:21:28 2018 +0100
Factorial
commit 289f0818d159f237029219cfaad8ad8c00719524
Author: Jose F. Sanchez <[email protected]>
Date: Fri Nov 9 15:15:39 2018 +0100
Factorial
commit e1f5013bdb3fd1fe629fae5130b04a52afbc1e8e
Author: Jose F. Sanchez <[email protected]>
Date: Fri Nov 9 15:12:46 2018 +0100
Factorial
commit 993a4894276b56573d8dca12eab9724ce3f6388a
Author: Jose F. Sanchez <[email protected]>
Date: Fri Nov 9 15:06:27 2018 +0100
Factorial binomial
commit 1cf3c063eb109e59f18ef25941684092b81393a2
Author: Jose F. Sanchez <[email protected]>
Date: Fri Nov 9 14:53:59 2018 +0100
Fix pileup
commit 569bcb1f1cf7f2eec07789fb2b517f8af7bfe264
Author: Jose F. Sanchez <[email protected]>
Date: Fri Nov 9 12:46:20 2018 +0100
Fix bug message errorLog
commit 92275e86be66e5e45c743a3777a9bd229f2369f6
Author: Jose F. Sanchez <[email protected]>
Date: Fri Nov 9 12:23:12 2018 +0100
update, fixed
commit e65b081459b8ca76b04b30dc05cff3477322a14a
Author: Jose F. Sanchez <[email protected]>
Date: Fri Nov 9 12:03:07 2018 +0100
noDiscard option
commit a2ea6009a96f72c2a115ffba6557b95d80177498
Author: Jose F. Sanchez <[email protected]>
Date: Fri Nov 9 09:22:30 2018 +0100
Update DOMINO module
commit 1737ec35797358954da886920aad42f723f5669b
Author: Jose F. Sanchez <[email protected]>
Date: Thu Nov 8 15:14:17 2018 +0100
Fix some bugs
commit 39e7cabb2702c313b3a55fc6125fba51bbec4bb7
Author: Jose F. Sanchez <[email protected]>
Date: Wed Nov 7 13:06:42 2018 +0100
Update version
commit 94fee84be6d1dd5470f89660fc410e6943591a0c
Merge: 36d0197 7e9b44c
Author: Jose Francisco Sanchez-Herrero <[email protected]>
Date: Wed Nov 7 13:00:16 2018 +0100
Merge pull request #11 from molevol-ub/developer
v1.1 Implementation
commit 7e9b44c51bb5c71b1f1fe5159b6cd7456852fa90
Author: Jose F. Sanchez <[email protected]>
Date: Wed Nov 7 12:58:19 2018 +0100
version v1.1 implemented
commit a61855f89ab9069fa04c0e9653a683cbb0f75742
Author: Jose F. Sanchez <[email protected]>
Date: Tue Nov 6 12:07:00 2018 +0100
updates, fixes
commit f8b93b44aa9df3c2749e094d405455274a664378
Author: Jose F. Sanchez <[email protected]>
Date: Mon Nov 5 17:11:05 2018 +0100
Multi modular implementation
commit 72f1448b066c91bd3f0b0b0285e11e4f31b3d29d
Author: Jose F. Sanchez <[email protected]>
Date: Mon Nov 5 10:01:34 2018 +0100
make code clearer
commit bcdb71e24fed8daaa142d5f23fa261bf5f0d769b
Author: Jose F. Sanchez <[email protected]>
Date: Wed Oct 31 12:56:10 2018 +0100
Mapping reads implemented
commit bd7ac9e5d0ba8ae65557e47821a0246dca9dfd0e
Author: Jose F. Sanchez <[email protected]>
Date: Wed Oct 31 11:06:08 2018 +0100
small changes
commit d8f3dd486e7c5345f83b8b1731f6d6f08a04e366
Author: Jose F. Sanchez <[email protected]>
Date: Tue Oct 30 17:48:32 2018 +0100
Working on mappingReads file
commit a306d5f233074d568199c1288ca48dc67b6dcb69
Author: Jose F. Sanchez <[email protected]>
Date: Tue Oct 30 17:08:02 2018 +0100
Change script names
commit 525230c29d5ed0fba8dad4ee36236052cc162ad3
Author: Jose F. Sanchez <[email protected]>
Date: Tue Oct 30 16:49:45 2018 +0100
Pileup generation and filtered implemented in diferent file
commit cad55dbfa50aa9e2a60e0297a060c21f7997d056
Author: Jose F. Sanchez <[email protected]>
Date: Tue Oct 30 11:17:05 2018 +0100
Added MarkerOverlap into separate file
commit 339aa94a9b19d6e098d6e3c1df67976e43a88b93
Author: Jose F. Sanchez <[email protected]>
Date: Tue Oct 30 10:24:14 2018 +0100
Added MIRA in separate script
commit a1335b20591d3d2db6a057a2df19d9fe598e49bb
Merge: df4c333 36d0197
Author: Jose F. Sanchez <[email protected]>
Date: Mon Oct 29 16:12:00 2018 +0100
merging
commit 36d0197f3ebdcaabc4b42bc8a0354f47d49c1126
Author: Jose F. Sanchez <[email protected]>
Date: Mon Oct 29 16:03:32 2018 +0100
MCT modification
commit 58c6929eb9237dbd9aeff782d08d9120b330b246
Author: Jose F. Sanchez <[email protected]>
Date: Mon Oct 29 13:54:53 2018 +0100
Add absolute path for user read files provided
commit df4c333a28bc59500287d3300470596c531b706a
Author: Jose F. Sanchez <[email protected]>
Date: Wed Oct 24 15:09:57 2018 +0200
Add control step
commit 74be71483b656598becaa5033f31ad2ce75c94c5
Author: Jose F. Sanchez <[email protected]>
Date: Wed Oct 24 15:07:22 2018 +0200
Added SPAdes run script
commit 2928c6aa6840d9eb0c6f77ad70dffba79c7ffc53
Author: Jose F. Sanchez <[email protected]>
Date: Wed Oct 24 13:29:22 2018 +0200
Added print_Excel
commit f42832ce2f3f313ae5b177535ab200a23acf02b2
Author: Jose F. Sanchez <[email protected]>
Date: Tue Oct 23 17:47:17 2018 +0200
domino_params and files implemented
commit 7e220a07f21a60d8efc106c23cd765f417ae0226
Author: Jose F. Sanchez <[email protected]>
Date: Fri Oct 19 13:00:28 2018 +0200
Update and fix
commit bc75088a9ee8abe4211082cd435ecbb3afdea34b
Author: Jose F. Sanchez <[email protected]>
Date: Fri Oct 19 12:48:37 2018 +0200
Updating changes in developer branch
commit d9e2e1d056d8572295c93dc8e4c09ea5e4394078
Author: Jose F. Sanchez <[email protected]>
Date: Wed Oct 17 12:20:17 2018 +0200
Update and unify finish timestamp
commit f52ec218b763a96239bc2e64fac2af60c1111c3d
Author: Jose F. Sanchez <[email protected]>
Date: Wed Oct 17 12:09:35 2018 +0200
Added contig stats
commit fef31af968f20ef597d7334411bc40123290b9d4
Author: Jose F. Sanchez <[email protected]>
Date: Wed Oct 17 08:55:21 2018 +0200
Add dependencies script
commit 48ef3fca22349b05b45481dd8b3a3cc46d921efd
Author: Jose F. Sanchez <[email protected]>
Date: Wed Oct 17 08:54:54 2018 +0200
update TODOs
commit fe3ae3b5637c273040d6bfd55080adc959043fff
Author: Jose F. Sanchez <[email protected]>
Date: Mon Oct 15 16:57:05 2018 +0200
time_log added to DOMINO.pm successfully
commit 36a41a8f2b561f80ded7e807c222dde0030b5542
Author: Jose F. Sanchez <[email protected]>
Date: Mon Oct 15 13:03:10 2018 +0200
Close STATS file for DOMINO mapping
commit d7bbe15e5b3d5f6e9e80eb5a6217c3d715b6a003
Author: Jose F. Sanchez <[email protected]>
Date: Wed Oct 10 18:01:11 2018 +0200
add some control steps
commit b5bbd68d2c714d89401fc5e1258c0d832a225f8d
Author: Jose F. Sanchez <[email protected]>
Date: Wed Oct 10 17:40:17 2018 +0200
Fix missing folder
commit b09cdf9f1bb5ad47442951d415497b78d11710d6
Author: Jose F. Sanchez <[email protected]>
Date: Wed Oct 10 17:29:22 2018 +0200
testing0
commit 0ca239c9ab3dc9b4040f33c2aea1a65f545ccd48
Merge: 7d26f1b 7e84467
Author: Jose F. Sanchez <[email protected]>
Date: Wed Oct 10 17:10:48 2018 +0200
merge
commit 7e8446757527037e642061b49e489d470f6536e4
Merge: c9ac2a3 7d26f1b
Author: Jose F. Sanchez <[email protected]>
Date: Wed Oct 10 17:09:47 2018 +0200
Fix merging...
commit c9ac2a39cfd250c2699a94c1560ee780122eb925
Author: Jose F. Sanchez <[email protected]>
Date: Wed Oct 10 16:55:56 2018 +0200
Fix avoid mapping
commit c38b4320d1aa252954fe36b7481d129d69f00492
Author: Jose F. Sanchez <[email protected]>
Date: Wed Oct 10 14:41:29 2018 +0200
Fixed excel for genome
commit 7d26f1b3f857f239e1f367cccf365e1c7874d9ef
Merge: 63e7295 9c3efb8
Author: Jose Francisco Sanchez-Herrero <[email protected]>
Date: Wed Oct 10 12:57:53 2018 +0200
Merge pull request #9 from molevol-ub/developer
fix bug
commit 9c3efb87bcaa1ac5722167b4b26a438fa32dc97b
Author: Jose F. Sanchez <[email protected]>
Date: Wed Oct 10 12:51:23 2018 +0200
fix bug
commit 63e729574d6353634409a38b3eceef6c2290316c
Author: jfsanchezherrero <[email protected]>
Date: Wed Oct 10 12:29:57 2018 +0200
fix bug mapping genome
commit 822282446849609eafb603e787cfcc7b389afde9
Author: jfsanchezherrero <[email protected]>
Date: Tue Jan 23 18:27:27 2018 +0100
Fix bug avoid mapping genome
commit 57aef098dafb36d8fa47977ed9bcc78d590bc5b0
Merge: 9f88f5a 172481a
Author: Jose Francisco Sanchez-Herrero <[email protected]>
Date: Tue Jan 23 12:50:49 2018 +0100
Merge pull request #8 from molevol-ub/developer
Working on Fixing bug genome avoid mapping
commit 172481a9d946a87814ba278e65bc4c7d2a5d91ee
Author: jfsanchezherrero <[email protected]>
Date: Tue Jan 23 12:28:07 2018 +0100
Fixing bug genome avoid mapping
commit 9f88f5a696794c4f05b9528efdb325fd72e98939
Author: jfsanchezherrero <[email protected]>
Date: Tue Jan 23 12:16:39 2018 +0100
Update Change.log file
commit 2805f244ebe4c173a5fa527eaee2583627f7135a
Author: jfsanchezherrero <[email protected]>
Date: Tue Jan 23 12:09:10 2018 +0100
Genome option fixed
commit 812698a36593414d0a46c349c6c36bc1ec311384
Merge: b29547f 00b0fdd
Author: Jose Francisco Sanchez-Herrero <[email protected]>
Date: Fri Jan 19 16:38:50 2018 +0100
Merge pull request #7 from molevol-ub/developer
Developer branch
commit 00b0fddfc06af385051ec27bcadcfb322073f44d
Author: Jose F. Sanchez <[email protected]>
Date: Fri Jan 19 16:35:45 2018 +0100
fixed memory RAM leak
commit 04693feb929c9efe850c055ae58a4f0de170f638
Author: Jose F. Sanchez <[email protected]>
Date: Fri Jan 19 12:54:48 2018 +0100
Did I Find it?
commit 3eaaa1c923b112a0d892e1c44b94289362f6c8c8
Author: Jose F. Sanchez <[email protected]>
Date: Fri Jan 19 12:53:25 2018 +0100
Did I Find it?
commit b2c2c3ab96868058c6a42ce337498c1500f63355
Author: Jose F. Sanchez <[email protected]>
Date: Fri Jan 19 12:19:33 2018 +0100
last test
commit 564c8309e60e0fa661a3503858fcc20ecfb27c8e
Author: Jose F. Sanchez <[email protected]>
Date: Fri Jan 19 11:48:58 2018 +0100
last test
commit c104eef033aef5eff2106fd15522faaba7e66625
Author: Jose F. Sanchez <[email protected]>
Date: Fri Jan 19 10:04:25 2018 +0100
last test
commit 9077b99f66fef74b4d2242b3540689a1b25b3c20
Author: Jose F. Sanchez <[email protected]>
Date: Thu Jan 18 16:22:33 2018 +0100
No Devel::size module
commit 402a72b9161b4dce90d2cf999f2d1eb550de9a97
Author: Jose F. Sanchez <[email protected]>
Date: Thu Jan 18 16:21:22 2018 +0100
Giving up...
commit b8133ac45ebe8e238e220b6aaaaf4ae795ad4770
Author: Jose F. Sanchez <[email protected]>
Date: Thu Jan 18 15:23:39 2018 +0100
no filling profile
commit 68f1600db67e86c69c28358fba1b47e9dd0afd7d
Author: Jose F. Sanchez <[email protected]>
Date: Thu Jan 18 15:22:13 2018 +0100
no filling profile
commit 6f32e3c785ec04dcec6b9a2ba1bbe9bb51d02423
Author: Jose F. Sanchez <[email protected]>
Date: Thu Jan 18 14:28:25 2018 +0100
No returning string
commit d89763bc3ae3ee68788e279862a96d66c655917d
Author: Jose F. Sanchez <[email protected]>
Date: Thu Jan 18 12:29:46 2018 +0100
No returning string
commit 08dd1fa88ac469957aa28a86c687d9e7d3f8e927
Author: Jose F. Sanchez <[email protected]>
Date: Thu Jan 18 11:09:27 2018 +0100
No returning string
commit 79f1acd596cd5b7f13d8c7a441c828398ffefdfd
Author: Jose F. Sanchez <[email protected]>
Date: Wed Jan 17 18:11:56 2018 +0100
Finding
commit d7c9a90171d7ca216ec80e7d76467cbf989273d8
Author: Jose F. Sanchez <[email protected]>
Date: Wed Jan 17 16:20:57 2018 +0100
Keep on
commit 5b5cc4cdaceb283d97c437dc867876c99a795f25
Author: Jose F. Sanchez <[email protected]>
Date: Wed Jan 17 16:19:19 2018 +0100
Working on bug
commit 8946de8cb94a48c2992f714dfa5bb0ad443e3479
Author: Jose F. Sanchez <[email protected]>
Date: Wed Jan 17 14:47:12 2018 +0100
Working on bug
commit d38e56fee5c3032d95aae817f648a364e73f3cb7
Author: Jose F. Sanchez <[email protected]>
Date: Wed Jan 17 13:19:58 2018 +0100
Working on bug
commit f2a5565198723b053c0600126159fb40f3e97131
Author: Jose F. Sanchez <[email protected]>
Date: Wed Jan 17 11:18:13 2018 +0100
Checking RAM Devel::Size
commit fd27d91c735b187b5d79675916f2a4e840fe4d1f
Author: Jose F. Sanchez <[email protected]>
Date: Tue Jan 16 14:15:29 2018 +0100
Working on bug
commit 4e04b50720b2f55832defc6ae2c593bffaeaa113
Author: Jose F. Sanchez <[email protected]>
Date: Tue Jan 16 10:47:30 2018 +0100
Working on bug
commit 84a0c43a77d3c26435bce8af16ff9442e3996a0b
Author: Jose F. Sanchez <[email protected]>
Date: Mon Jan 15 11:48:39 2018 +0100
next after check_marker_all
commit f12feb8262aea5845908e166d186e3a95a62cb5d
Author: Jose F. Sanchez <[email protected]>
Date: Mon Jan 15 11:18:42 2018 +0100
next after check_marker_pairwise
commit 3962cc2e2b2ae7aa036ecd441b3ee9c415534284
Author: Jose F. Sanchez <[email protected]>
Date: Mon Jan 15 10:46:06 2018 +0100
return -> next
commit ecaf1f6ce8eb85b87ef6bce81bdd8301380fa325
Author: Jose F. Sanchez <[email protected]>
Date: Fri Jan 12 18:03:14 2018 +0100
Finding the bug...
commit 466a9bd9221032646543f6a34ddf4359c605e243
Author: Jose F. Sanchez <[email protected]>
Date: Fri Jan 12 13:34:33 2018 +0100
Discard dump hash
commit 9ee28f9f291a569452642e9d48dffa7a9ab64621
Author: Jose F. Sanchez <[email protected]>
Date: Fri Jan 12 13:07:41 2018 +0100
Let collapse..[DEBUGGING]
commit 488998e99ecaeaf0eda3d092a9fd03701a74d612
Author: Jose F. Sanchez <[email protected]>
Date: Fri Jan 12 11:20:07 2018 +0100
Finding the bug
commit 9b0819560f7ba5036b13926edca38e735b9d406c
Author: Jose F. Sanchez <[email protected]>
Date: Thu Jan 11 15:31:59 2018 +0100
Let collapse..[DEBUGGING]
commit 5eed145004fddbf001eb7c1e9f7c1cc38aa8cfc7
Author: Jose F. Sanchez <[email protected]>
Date: Thu Jan 11 11:24:28 2018 +0100
checking possibles glitch
commit 788673b1562b24cbf4ec324340071cc201970684
Author: Jose F. Sanchez <[email protected]>
Date: Thu Jan 11 10:53:09 2018 +0100
Sleeping for debugging
commit 3aa16c63f1d2b5ef250e0ff6cb90e55ee7d780b9
Author: Jose F. Sanchez <[email protected]>
Date: Tue Dec 19 15:04:28 2017 +0100
Marker selection fixed for dnaSP
commit dac6fdc341dbae92e912e856b10fbc13500e6b4b
Author: Jose F. Sanchez <[email protected]>
Date: Tue Dec 19 10:55:05 2017 +0100
Marker selection fixed for dnaSP
commit 9c88eddbf15e6ed1ad621f620be65ff8dc526b8c
Author: Jose F. Sanchez <[email protected]>
Date: Wed Nov 22 18:13:32 2017 +0100
Fixed bug
commit 16f25cba5f1cc330a479d876b8251f58bd1d7b0d
Author: Jose F. Sanchez <[email protected]>
Date: Wed Nov 22 13:00:26 2017 +0100
Undef not useful variables
commit 970283df6999be9e8ceb12f64d161ca011c602d8
Author: Jose F. Sanchez <[email protected]>
Date: Mon Nov 20 13:11:12 2017 +0100
Added subset_offset_user option
commit 81239ea69ad59065be0a4244e45a547be699e6d0
Author: Jose F. Sanchez <[email protected]>
Date: Mon Nov 20 13:06:17 2017 +0100
Added subset_offset_user option
commit c77024e91cec5948f133dfbedb1a38b2af7c2541
Author: Jose F. Sanchez <[email protected]>
Date: Mon Nov 20 12:53:43 2017 +0100
Fixed bug
commit 5eb67a2134957cd2355772d80983e38bed770f17
Author: Jose F. Sanchez <[email protected]>
Date: Fri Nov 17 12:44:49 2017 +0100
Fixing
commit dce4bb986b7201a1da6ca67b637101071dc8c0d1
Author: Jose F. Sanchez <[email protected]>
Date: Fri Nov 17 12:13:25 2017 +0100
Updating and fixing bug
commit 4f11929466a262d3a11bc870570fbc67dea59fed
Author: Jose F. Sanchez <[email protected]>
Date: Fri Nov 17 12:02:50 2017 +0100
Updating and fixing bug
commit 09ae22b1ada0addb4ab438931a638f93e03f2b5c
Author: Jose F. Sanchez <[email protected]>
Date: Fri Nov 17 10:48:35 2017 +0100
Fixing bug
commit 69c83e4dd00c19ce7b9f7c7386c65d4052966d34
Author: Jose F. Sanchez <[email protected]>
Date: Fri Nov 17 09:33:40 2017 +0100
Working on bug
commit 9b93e053bf078c713f97e7ff4270d9174a2dc570
Author: Jose F. Sanchez <[email protected]>
Date: Fri Nov 17 09:06:30 2017 +0100
Working on bug
commit 0e0d09a68ebfe92d3044ec43d9736f5992225450
Author: Jose F. Sanchez <[email protected]>
Date: Thu Nov 16 11:24:22 2017 +0100
Useless use bug fix: => ERROR
commit 176133f029e73ab473d71c48abc85870157bd7ed
Author: Jose F. Sanchez <[email protected]>
Date: Thu Nov 16 10:09:04 2017 +0100
Fixed excel output
commit f48db48b62335b6b7d57cac1b605d1cb48a64879
Author: Jose F. Sanchez <[email protected]>
Date: Wed Nov 15 13:36:38 2017 +0100
Updated discovery MSA
commit 5520f8ad3e75bf7976c21bfd07ab20546f604e6d
Author: Jose F. Sanchez <[email protected]>
Date: Wed Nov 15 12:33:46 2017 +0100
Update MSA selection
commit 4d9db1573895f8f5e0dadae12f5ea54859df9ad4
Author: Jose F. Sanchez <[email protected]>
Date: Wed Nov 15 11:04:28 2017 +0100
Fix experimental keys hash
commit c10280d568859e053b5530104910a9c5749ad4ac
Author: Jose F. Sanchez <[email protected]>
Date: Wed Nov 15 10:58:51 2017 +0100
Checking the ram glitch
commit b29547f128368428cd52ebd5b5efe477b95a5f90
Author: Jose F. Sanchez <[email protected]>
Date: Mon Sep 18 17:44:39 2017 +0200
Closing file
commit 3c5b14ca38c78a70b28b7fc4428f84b861ba07b7
Author: Jose F. Sanchez <[email protected]>
Date: Mon Sep 18 17:15:49 2017 +0200
TODOs added to do
commit ea3bd8b482c4d269b8a6f97c4dc96d46ac7bdc7e
Author: Jose F. Sanchez <[email protected]>
Date: Mon Sep 18 16:53:34 2017 +0200
Finding the glitch?
commit adeffa48d8a1f04e705d4844f8929c0f60b1cc59
Author: Jose F. Sanchez <[email protected]>
Date: Fri Sep 15 11:59:02 2017 +0200
Fix bug
commit 1c7c29ee13d0184574585b33d445e7e0cb34d8ee
Author: Jose F. Sanchez <[email protected]>
Date: Fri Sep 15 11:56:33 2017 +0200
Checking the glitch
commit a754f8b6e741c011584c11f6963b78e6872400fa
Author: Jose F. Sanchez <[email protected]>
Date: Wed Dec 7 11:40:56 2016 +0100
Overlapping and sliding changed
commit 974b28c2d27cdee76eefb78f900ed8cc43787270
Author: Jose F. Sanchez <[email protected]>
Date: Tue Nov 22 18:10:11 2016 +0100
Overlapping markers changed
commit 5b76c81669f20f53caa08207ea93159b6a9cdf09
Author: Jose F. Sanchez <[email protected]>
Date: Fri Nov 18 17:27:58 2016 +0100
V-SI_inc & C-SI_inc options added
commit 5b29bb0314740062ce3ba764a8219315898a9010
Author: Jose F. Sanchez <[email protected]>
Date: Thu Nov 17 13:31:11 2016 +0100
Threads implemented for mapping reads
commit 039e711d91047fcf52c13e6501844ebeab0e0fa9
Author: Jose F. Sanchez <[email protected]>
Date: Wed Nov 16 18:33:18 2016 +0100
keep on debugging
commit 3733a533137236fc08d0d14599afd3d7a7d9dcdd
Author: Jose F. Sanchez <[email protected]>
Date: Mon Nov 14 14:58:27 2016 +0100
Commit 24892dd85f10322098a7f5dc5b8139daa7abc484 fixed
commit 24892dd85f10322098a7f5dc5b8139daa7abc484
Author: Jose F. Sanchez <[email protected]>
Date: Mon Nov 14 13:11:56 2016 +0100
Assembly stats bug fixed
commit 75d6a857d178e0e3a70927df5c61998c4e8fa324
Author: Jose F. Sanchez <[email protected]>
Date: Wed Nov 9 10:27:42 2016 +0100
Some bugs fixed, still missing
commit a77b39902e0212bed89aed0c40807ce14041fe73
Author: Jose F. Sanchez <[email protected]>
Date: Mon Nov 7 18:28:47 2016 +0100
Updating manual and setting clustering
commit 1b66edb41139a92ec1e4502f43054e81651273bd
Author: Jose F. Sanchez <[email protected]>
Date: Mon Nov 7 14:59:56 2016 +0100
Updated version and date
commit 6afe16dc6c3bdeadce526fd96f345c07afdb7f3f
Author: Jose F. Sanchez <[email protected]>
Date: Mon Nov 7 12:59:23 2016 +0100
Ambiguous bases bug fixed and parallel fasta splitting fixed
commit a4ff6caaa9bda098128045d4c25e31e19bb3eae7
Author: Jose F. Sanchez <[email protected]>
Date: Fri Nov 4 19:40:16 2016 +0100
Closing files...
commit 144d11c633f32c0b3ce5636216a3aa432d7990ed
Author: Jose F. Sanchez <[email protected]>
Date: Fri Nov 4 19:06:50 2016 +0100
Debugging: too fast committing on friday evening
commit 6280de3f5f88edca81893ef05bcdab4fd01f8a4c
Author: Jose F. Sanchez <[email protected]>
Date: Fri Nov 4 18:51:19 2016 +0100
Discarding comment lines
commit e234d03c42c9bb2c9636173a95c514f5d29aaecf
Author: Jose F. Sanchez <[email protected]>
Date: Fri Nov 4 18:45:05 2016 +0100
Debugging necessary
commit a1ac5e9500cb3550da035aee8b29eca5a6d6b378
Author: Jose F. Sanchez <[email protected]>
Date: Fri Nov 4 15:22:23 2016 +0100
Threads implemented but still fixing and debugging necessary
commit 91501fc580f037c5dc92d96fa445bfe2938ec5ea
Author: Jose F. Sanchez <[email protected]>
Date: Wed Nov 2 17:19:44 2016 +0100
Sliding window improved. -SI|--sliding_interval added
commit 2600536b847e87e6b23af35975aac9fe0e866bc6
Author: Jose F. Sanchez <[email protected]>
Date: Wed Oct 26 18:51:00 2016 +0200
Range for VAR and CONS region size
commit d332c6705b4cfa713aa670cc54cf60b7ae6c706f
Author: Jose F. Sanchez <[email protected]>
Date: Tue Oct 25 19:34:58 2016 +0200
Threads implemented but still fixing and debugging necessary
commit 616b529683cdd904fa033b6182fb0078c0457572
Author: Jose F. Sanchez <[email protected]>
Date: Fri Oct 21 18:50:59 2016 +0200
Threads for SAM parsing
commit bf4725591dc8c7cf4ed494a22531e8c446a16c54
Author: Jose F. Sanchez <[email protected]>
Date: Thu Oct 20 19:09:14 2016 +0200
Implemented threads: mapping and parsing of sam Files
commit 5b9098becc80f7ecc26aab9c7e179545ded07498
Author: Jose F. Sanchez <[email protected]>
Date: Thu Sep 22 11:34:25 2016 +0200
TODOs done
commit 3cc2169a5b5ec3a6d1fda4d2aec9ab229bdb7b0c
Author: Jose F. Sanchez <[email protected]>
Date: Wed Sep 21 10:36:13 2016 +0200
Update date, availability and citation
commit efadc9fc758f5ecad5cf425cd9f00e3a390f5dc7
Author: Jose F. Sanchez <[email protected]>
Date: Wed Sep 21 10:20:30 2016 +0200
check_Threads flag debugged
commit 7cb729d44030ec0cbbeb3a9544b6b196278726b5
Author: Jose F. Sanchez <[email protected]>
Date: Wed Sep 21 10:17:35 2016 +0200
check_Threads flag implemented
commit 12ed5aec1004ebc084657103f82fe81a9cf1ac2c
Author: Jose F. Sanchez <[email protected]>
Date: Tue Sep 20 13:35:09 2016 +0200
Updated Installer BitRock xml file (Mac)
commit df14c01106842c43c02c04889dfa39a4d7ff49ba
Author: molevol <[email protected]>
Date: Tue Sep 20 13:34:20 2016 +0200
Updated Installer BitRock xml file (Linux)
commit 49da0e69ae2c2c90561a1ac703d8c52938b94c5f
Author: Jose F. Sanchez <[email protected]>
Date: Tue Sep 20 13:25:59 2016 +0200
Release v1.0.1
commit 591bc5f740eb4912ee1675433cb9e059b9b5b467
Author: Jose F. Sanchez <[email protected]>
Date: Tue Sep 20 13:16:55 2016 +0200
Fixed a bug when using -NPG option in the Marker phase
commit 603d882423a839b0f7f8c1b78d0122f850bb7663
Author: molevol <[email protected]>
Date: Mon Sep 19 19:18:30 2016 +0200
Release DOMINO v1.0
commit 8c4b6dcea424b7d379e7dc3e23a89abd06c67abb
Author: Jose F. Sanchez <[email protected]>
Date: Mon Sep 19 18:03:52 2016 +0200
Release DOMINO v1.0
commit 3cbccd730c7ea3814402a2be1693d88d039480b0
Author: Jose F. Sanchez <[email protected]>
Date: Mon Sep 19 13:30:35 2016 +0200
Version fixed after publication
commit 7f9d4882a958d28f973234fde3586d4c3fb4f848
Author: Jose F. Sanchez <[email protected]>
Date: Fri Sep 16 13:11:26 2016 +0200
Fixing some bugs but still missing
commit 020d72c4ec53a92b496206c480aa85e8f71e7b25
Author: Jose F. Sanchez <[email protected]>
Date: Thu Sep 15 18:08:59 2016 +0200
DOMINO.pm for DM_Markers
commit 23d56d8c6147a65d837c2ce415732be52bc85f08
Author: Jose F. Sanchez <[email protected]>
Date: Thu Sep 15 18:08:26 2016 +0200
Added DOMINO.pm to installers
commit b0ace73b4cc302b94f3fb4d4bd711d4e2557a1df
Author: Jose F. Sanchez <[email protected]>
Date: Thu Sep 15 11:10:30 2016 +0200
debugging control
commit 53fdb95879e5a26342f0882f423c5eacb3cb9603
Author: Jose F. Sanchez <[email protected]>
Date: Thu Sep 15 11:09:22 2016 +0200
Added a binary for NCBI-blast
commit 6a5582fadcd77492a1b59a21d910468d39ac0c54
Author: JF <[email protected]>
Date: Thu Sep 15 10:20:28 2016 +0200
Added citation to GUI
commit dbb04c5854b6addb7df3bbfd70e68c8c397f280a
Author: molevol <[email protected]>
Date: Wed Sep 14 17:39:15 2016 +0200
Fixed some bugs when installing
commit 34cf13e1f01094e392305b9d9050991a10fd99e8
Author: Jose F. Sanchez <[email protected]>
Date: Wed Sep 14 16:52:01 2016 +0200
Fixing bugs in installers
commit b3a44e62daab7040d756c1ff3ea014315ede1a2b
Author: Jose F. Sanchez <[email protected]>
Date: Wed Sep 14 16:30:13 2016 +0200
Add installation steps for new implementations
commit 6ecc7d0bc102709b888616cf57ea169613db41ed
Author: Jose F. Sanchez <[email protected]>
Date: Wed Sep 14 16:11:07 2016 +0200
Added htslib to samtools
commit 92a4126d8ac2d1e21108c74a4ee341d00581e2e1
Author: Jose F. Sanchez <[email protected]>
Date: Wed Sep 14 15:13:46 2016 +0200
Added bowtie2.2.9, spades and samtools.1.3.1
commit 827696a40ae728d0fa4144f2a75b4ff16eaf5a36
Author: Jose F. Sanchez <[email protected]>
Date: Tue Sep 13 19:01:11 2016 +0200
Applying DOMINO.pm
commit a8130c83d5c3655b5837d02d855da3ff89e299ba
Author: Jose F. Sanchez <[email protected]>
Date: Mon Sep 12 18:55:08 2016 +0200
Updating and applying DOMINO.pm
commit 72243cf5409a22462ed31372d5d24bb6907f4b55
Author: Jose F. Sanchez <[email protected]>
Date: Fri Sep 9 15:58:11 2016 +0200
Some TODOs fixed
commit 16b456f5733ea8066f5dc2543937896adb047c72
Author: Jose F. Sanchez <[email protected]>
Date: Thu Sep 8 17:45:17 2016 +0200
Updating and fixing to use DOMINO.pm
commit d2da019f730d30a34bde57a850ff452679516f17