From 9f9775080518c293d5f665ad1d43195332b4b6b2 Mon Sep 17 00:00:00 2001 From: Circle Ci Date: Wed, 1 Jan 2025 16:10:30 +0000 Subject: [PATCH] doc updates [skip ci] --- dev/.buildinfo | 2 +- .../auto_examples_python.zip | Bin 100564 -> 100564 bytes .../read_bids_datasets.zip | Bin 19834 -> 19834 bytes .../mark_bad_channels.zip | Bin 16471 -> 16471 bytes .../convert_mne_sample.zip | Bin 20477 -> 20477 bytes .../convert_nirs_to_bids.zip | Bin 16280 -> 16280 bytes .../convert_group_studies.zip | Bin 11180 -> 11180 bytes .../rename_brainvision_files.zip | Bin 8915 -> 8915 bytes .../auto_examples_jupyter.zip | Bin 155040 -> 155040 bytes .../bidspath.zip | Bin 17534 -> 17534 bytes .../convert_ieeg_to_bids.zip | Bin 47920 -> 47920 bytes .../update_bids_datasets.zip | Bin 11246 -> 11246 bytes .../create_bids_folder.zip | Bin 5678 -> 5678 bytes .../anonymize_dataset.zip | Bin 19666 -> 19666 bytes .../convert_eeg_to_bids.zip | Bin 21339 -> 21339 bytes .../convert_mri_and_trans.zip | Bin 27350 -> 27350 bytes .../convert_empty_room.zip | Bin 11978 -> 11978 bytes dev/_modules/index.html | 10 +- dev/_modules/mne_bids/copyfiles.html | 10 +- dev/_modules/mne_bids/dig.html | 10 +- dev/_modules/mne_bids/inspect.html | 10 +- dev/_modules/mne_bids/path.html | 10 +- dev/_modules/mne_bids/read.html | 10 +- dev/_modules/mne_bids/report/_report.html | 10 +- dev/_modules/mne_bids/sidecar_updates.html | 10 +- dev/_modules/mne_bids/stats.html | 10 +- dev/_modules/mne_bids/utils.html | 12 +- dev/_modules/mne_bids/write.html | 10 +- dev/_static/documentation_options.js | 2 +- dev/api.html | 10 +- dev/authors.html | 10 +- dev/auto_examples/anonymize_dataset.html | 72 +- dev/auto_examples/bidspath.html | 10 +- dev/auto_examples/convert_eeg_to_bids.html | 896 +----------------- dev/auto_examples/convert_empty_room.html | 12 +- dev/auto_examples/convert_group_studies.html | 18 +- dev/auto_examples/convert_ieeg_to_bids.html | 186 +--- dev/auto_examples/convert_mne_sample.html | 58 +- dev/auto_examples/convert_mri_and_trans.html | 12 +- dev/auto_examples/convert_nirs_to_bids.html | 22 +- dev/auto_examples/create_bids_folder.html | 12 +- dev/auto_examples/mark_bad_channels.html | 12 +- dev/auto_examples/read_bids_datasets.html | 313 +----- .../rename_brainvision_files.html | 10 +- dev/auto_examples/sg_execution_times.html | 58 +- dev/auto_examples/update_bids_datasets.html | 84 +- dev/contribute.html | 10 +- dev/generated/cli.html | 10 +- dev/generated/mne_bids.BIDSPath.html | 10 +- dev/generated/mne_bids.anonymize_dataset.html | 10 +- .../mne_bids.convert_montage_to_mri.html | 10 +- .../mne_bids.convert_montage_to_ras.html | 10 +- ...e_bids.copyfiles.copyfile_brainvision.html | 10 +- .../mne_bids.copyfiles.copyfile_bti.html | 10 +- .../mne_bids.copyfiles.copyfile_ctf.html | 10 +- .../mne_bids.copyfiles.copyfile_edf.html | 10 +- .../mne_bids.copyfiles.copyfile_eeglab.html | 10 +- .../mne_bids.copyfiles.copyfile_kit.html | 10 +- .../mne_bids.find_matching_paths.html | 10 +- .../mne_bids.get_anat_landmarks.html | 10 +- .../mne_bids.get_anonymization_daysback.html | 10 +- .../mne_bids.get_bids_path_from_fname.html | 10 +- dev/generated/mne_bids.get_datatypes.html | 10 +- .../mne_bids.get_entities_from_fname.html | 10 +- dev/generated/mne_bids.get_entity_vals.html | 10 +- .../mne_bids.get_head_mri_trans.html | 10 +- dev/generated/mne_bids.inspect_dataset.html | 10 +- .../mne_bids.make_dataset_description.html | 10 +- dev/generated/mne_bids.make_report.html | 10 +- dev/generated/mne_bids.mark_channels.html | 10 +- dev/generated/mne_bids.print_dir_tree.html | 10 +- dev/generated/mne_bids.read_raw_bids.html | 10 +- .../mne_bids.search_folder_for_text.html | 10 +- .../mne_bids.stats.count_events.html | 10 +- dev/generated/mne_bids.template_to_head.html | 10 +- .../mne_bids.update_anat_landmarks.html | 10 +- .../mne_bids.update_sidecar_json.html | 10 +- dev/generated/mne_bids.write_anat.html | 10 +- .../mne_bids.write_meg_calibration.html | 10 +- .../mne_bids.write_meg_crosstalk.html | 10 +- dev/generated/mne_bids.write_raw_bids.html | 10 +- dev/genindex.html | 10 +- dev/index.html | 10 +- dev/install.html | 10 +- dev/objects.inv | Bin 3709 -> 3709 bytes dev/py-modindex.html | 10 +- dev/search.html | 10 +- dev/searchindex.js | 2 +- dev/sg_execution_times.html | 58 +- dev/use.html | 10 +- dev/whats_new.html | 12 +- dev/whats_new_previous_releases.html | 10 +- 92 files changed, 512 insertions(+), 1891 deletions(-) diff --git a/dev/.buildinfo b/dev/.buildinfo index 8fa85feef..65522cc5f 100644 --- a/dev/.buildinfo +++ b/dev/.buildinfo @@ -1,4 +1,4 @@ # Sphinx build info version 1 # This file records the configuration used when building these files. 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MNE-BIDS 0.17.0.dev14+g3492fa01 documentation

+

MNE-BIDS 0.17.0.dev15+g3f59b0e0 documentation

@@ -529,7 +529,7 @@

All modules for which code is available

- © Copyright 2017, The MNE-BIDS developers. Last updated on 2024-12-31. + © Copyright 2017, The MNE-BIDS developers. Last updated on 2025-01-01.

diff --git a/dev/_modules/mne_bids/copyfiles.html b/dev/_modules/mne_bids/copyfiles.html index ddc62c660..3c801b94b 100644 --- a/dev/_modules/mne_bids/copyfiles.html +++ b/dev/_modules/mne_bids/copyfiles.html @@ -7,7 +7,7 @@ - mne_bids.copyfiles — MNE-BIDS 0.17.0.dev14+g3492fa01 documentation + mne_bids.copyfiles — MNE-BIDS 0.17.0.dev15+g3f59b0e0 documentation @@ -43,7 +43,7 @@ - + @@ -77,7 +77,7 @@ - + @@ -140,7 +140,7 @@ -

MNE-BIDS 0.17.0.dev14+g3492fa01 documentation

+

MNE-BIDS 0.17.0.dev15+g3f59b0e0 documentation

@@ -1176,7 +1176,7 @@

Source code for mne_bids.copyfiles

 
   

     
-      © Copyright 2017, The MNE-BIDS developers. Last updated on 2024-12-31.
+      © Copyright 2017, The MNE-BIDS developers. Last updated on 2025-01-01.
       

     
   

diff --git a/dev/_modules/mne_bids/dig.html b/dev/_modules/mne_bids/dig.html
index 4bd9b8300..5833825f4 100644
--- a/dev/_modules/mne_bids/dig.html
+++ b/dev/_modules/mne_bids/dig.html
@@ -7,7 +7,7 @@
   
     
     
-    mne_bids.dig — MNE-BIDS 0.17.0.dev14+g3492fa01 documentation
+    mne_bids.dig — MNE-BIDS 0.17.0.dev15+g3f59b0e0 documentation
   
   
   
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+    
MNE-BIDS 0.17.0.dev15+g3f59b0e0 documentation
@@ -1322,7 +1322,7 @@

Source code for mne_bids.dig

 
   

     
-      © Copyright 2017, The MNE-BIDS developers. Last updated on 2024-12-31.
+      © Copyright 2017, The MNE-BIDS developers. Last updated on 2025-01-01.
       

     
   

diff --git a/dev/_modules/mne_bids/inspect.html b/dev/_modules/mne_bids/inspect.html
index eb4c6ee6d..69268a2a7 100644
--- a/dev/_modules/mne_bids/inspect.html
+++ b/dev/_modules/mne_bids/inspect.html
@@ -7,7 +7,7 @@
   
     
     
-    mne_bids.inspect — MNE-BIDS 0.17.0.dev14+g3492fa01 documentation
+    mne_bids.inspect — MNE-BIDS 0.17.0.dev15+g3f59b0e0 documentation
   
   
   
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+    
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@@ -977,7 +977,7 @@

Source code for mne_bids.inspect

 
   

     
-      © Copyright 2017, The MNE-BIDS developers. Last updated on 2024-12-31.
+      © Copyright 2017, The MNE-BIDS developers. Last updated on 2025-01-01.
       

     
   

diff --git a/dev/_modules/mne_bids/path.html b/dev/_modules/mne_bids/path.html
index c659bfbf6..00edc0fbe 100644
--- a/dev/_modules/mne_bids/path.html
+++ b/dev/_modules/mne_bids/path.html
@@ -7,7 +7,7 @@
   
     
     
-    mne_bids.path — MNE-BIDS 0.17.0.dev14+g3492fa01 documentation
+    mne_bids.path — MNE-BIDS 0.17.0.dev15+g3f59b0e0 documentation
   
   
   
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+    
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@@ -3094,7 +3094,7 @@

Source code for mne_bids.path

 
   

     
-      © Copyright 2017, The MNE-BIDS developers. Last updated on 2024-12-31.
+      © Copyright 2017, The MNE-BIDS developers. Last updated on 2025-01-01.
       

     
   

diff --git a/dev/_modules/mne_bids/read.html b/dev/_modules/mne_bids/read.html
index c0f34a399..1eb57e01d 100644
--- a/dev/_modules/mne_bids/read.html
+++ b/dev/_modules/mne_bids/read.html
@@ -7,7 +7,7 @@
   
     
     
-    mne_bids.read — MNE-BIDS 0.17.0.dev14+g3492fa01 documentation
+    mne_bids.read — MNE-BIDS 0.17.0.dev15+g3f59b0e0 documentation
   
   
   
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+    
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@@ -1768,7 +1768,7 @@

Source code for mne_bids.read

 
   

     
-      © Copyright 2017, The MNE-BIDS developers. Last updated on 2024-12-31.
+      © Copyright 2017, The MNE-BIDS developers. Last updated on 2025-01-01.
       

     
   

diff --git a/dev/_modules/mne_bids/report/_report.html b/dev/_modules/mne_bids/report/_report.html
index a60a9f52d..03eec7ca9 100644
--- a/dev/_modules/mne_bids/report/_report.html
+++ b/dev/_modules/mne_bids/report/_report.html
@@ -7,7 +7,7 @@
   
     
     
-    mne_bids.report._report — MNE-BIDS 0.17.0.dev14+g3492fa01 documentation
+    mne_bids.report._report — MNE-BIDS 0.17.0.dev15+g3f59b0e0 documentation
   
   
   
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@@ -1063,7 +1063,7 @@

Source code for mne_bids.report._report

 
   

     
-      © Copyright 2017, The MNE-BIDS developers. Last updated on 2024-12-31.
+      © Copyright 2017, The MNE-BIDS developers. Last updated on 2025-01-01.
       

     
   

diff --git a/dev/_modules/mne_bids/sidecar_updates.html b/dev/_modules/mne_bids/sidecar_updates.html
index a5aa8719a..8f3f4c4fd 100644
--- a/dev/_modules/mne_bids/sidecar_updates.html
+++ b/dev/_modules/mne_bids/sidecar_updates.html
@@ -7,7 +7,7 @@
   
     
     
-    mne_bids.sidecar_updates — MNE-BIDS 0.17.0.dev14+g3492fa01 documentation
+    mne_bids.sidecar_updates — MNE-BIDS 0.17.0.dev15+g3f59b0e0 documentation
   
   
   
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@@ -914,7 +914,7 @@

Source code for mne_bids.sidecar_updates

 
   

     
-      © Copyright 2017, The MNE-BIDS developers. Last updated on 2024-12-31.
+      © Copyright 2017, The MNE-BIDS developers. Last updated on 2025-01-01.
       

     
   

diff --git a/dev/_modules/mne_bids/stats.html b/dev/_modules/mne_bids/stats.html
index b18fa9bc2..a2af6e6f3 100644
--- a/dev/_modules/mne_bids/stats.html
+++ b/dev/_modules/mne_bids/stats.html
@@ -7,7 +7,7 @@
   
     
     
-    mne_bids.stats — MNE-BIDS 0.17.0.dev14+g3492fa01 documentation
+    mne_bids.stats — MNE-BIDS 0.17.0.dev15+g3f59b0e0 documentation
   
   
   
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@@ -654,7 +654,7 @@

Source code for mne_bids.stats

 
   

     
-      © Copyright 2017, The MNE-BIDS developers. Last updated on 2024-12-31.
+      © Copyright 2017, The MNE-BIDS developers. Last updated on 2025-01-01.
       

     
   

diff --git a/dev/_modules/mne_bids/utils.html b/dev/_modules/mne_bids/utils.html
index 0d4346a4b..a356ea7e3 100644
--- a/dev/_modules/mne_bids/utils.html
+++ b/dev/_modules/mne_bids/utils.html
@@ -7,7 +7,7 @@
   
     
     
-    mne_bids.utils — MNE-BIDS 0.17.0.dev14+g3492fa01 documentation
+    mne_bids.utils — MNE-BIDS 0.17.0.dev15+g3f59b0e0 documentation
   
   
   
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@@ -716,7 +716,7 @@

Source code for mne_bids.utils

             f'"{fname}" already exists. Please set overwrite to True.'
         )
 
-    json_output = json.dumps(dictionary, indent=4)
+    json_output = json.dumps(dictionary, indent=4, ensure_ascii=False)
     with open(fname, "w", encoding="utf-8") as fid:
         fid.write(json_output)
         fid.write("\n")
@@ -1086,7 +1086,7 @@ 
Source code for mne_bids.utils
 
   

     
-      © Copyright 2017, The MNE-BIDS developers. Last updated on 2024-12-31.
+      © Copyright 2017, The MNE-BIDS developers. Last updated on 2025-01-01.
       

     
   

diff --git a/dev/_modules/mne_bids/write.html b/dev/_modules/mne_bids/write.html
index b617a074f..de6b22c61 100644
--- a/dev/_modules/mne_bids/write.html
+++ b/dev/_modules/mne_bids/write.html
@@ -7,7 +7,7 @@
   
     
     
-    mne_bids.write — MNE-BIDS 0.17.0.dev14+g3492fa01 documentation
+    mne_bids.write — MNE-BIDS 0.17.0.dev15+g3f59b0e0 documentation
   
   
   
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+    
MNE-BIDS 0.17.0.dev15+g3f59b0e0 documentation

   
 

     
@@ -3817,7 +3817,7 @@ 
Source code for mne_bids.write
 
   

     
-      © Copyright 2017, The MNE-BIDS developers. Last updated on 2024-12-31.
+      © Copyright 2017, The MNE-BIDS developers. Last updated on 2025-01-01.
       

     
   

diff --git a/dev/_static/documentation_options.js b/dev/_static/documentation_options.js
index ad62fb681..eeb8613c8 100644
--- a/dev/_static/documentation_options.js
+++ b/dev/_static/documentation_options.js
@@ -1,5 +1,5 @@
 const DOCUMENTATION_OPTIONS = {
-    VERSION: '0.17.0.dev14+g3492fa01',
+    VERSION: '0.17.0.dev15+g3f59b0e0',
     LANGUAGE: 'en',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',
diff --git a/dev/api.html b/dev/api.html
index ad72e353c..8c003eb55 100644
--- a/dev/api.html
+++ b/dev/api.html
@@ -8,7 +8,7 @@
     
     
 
-    API Documentation — MNE-BIDS 0.17.0.dev14+g3492fa01 documentation
+    API Documentation — MNE-BIDS 0.17.0.dev15+g3f59b0e0 documentation
   
   
   
@@ -44,7 +44,7 @@
   
 
 
-    
+    
     
     
     
@@ -80,7 +80,7 @@
 
   
   
-  
+  
 
   
   
@@ -143,7 +143,7 @@
   
   
   
-    
MNE-BIDS 0.17.0.dev14+g3492fa01 documentation

+    
MNE-BIDS 0.17.0.dev15+g3f59b0e0 documentation

   
 

     
@@ -745,7 +745,7 @@ 
mne_bids.copyfiles
     
-      © Copyright 2017, The MNE-BIDS developers. Last updated on 2024-12-31.
+      © Copyright 2017, The MNE-BIDS developers. Last updated on 2025-01-01.
       

     
   

diff --git a/dev/authors.html b/dev/authors.html
index b56f30c6f..b20862ed7 100644
--- a/dev/authors.html
+++ b/dev/authors.html
@@ -8,7 +8,7 @@
     
     
 
-    <no title> — MNE-BIDS 0.17.0.dev14+g3492fa01 documentation
+    <no title> — MNE-BIDS 0.17.0.dev15+g3f59b0e0 documentation
   
   
   
@@ -44,7 +44,7 @@
   
 
 
-    
+    
     
     
     
@@ -78,7 +78,7 @@
 
   
   
-  
+  
 
   
   
@@ -141,7 +141,7 @@
   
   
   
-    
MNE-BIDS 0.17.0.dev14+g3492fa01 documentation

+    
MNE-BIDS 0.17.0.dev15+g3f59b0e0 documentation
@@ -541,7 +541,7 @@

- © Copyright 2017, The MNE-BIDS developers. Last updated on 2024-12-31. + © Copyright 2017, The MNE-BIDS developers. Last updated on 2025-01-01.

diff --git a/dev/auto_examples/anonymize_dataset.html b/dev/auto_examples/anonymize_dataset.html index 182c0f091..55de2099e 100644 --- a/dev/auto_examples/anonymize_dataset.html +++ b/dev/auto_examples/anonymize_dataset.html @@ -8,7 +8,7 @@ - Anonymizing a BIDS dataset — MNE-BIDS 0.17.0.dev14+g3492fa01 documentation + Anonymizing a BIDS dataset — MNE-BIDS 0.17.0.dev15+g3f59b0e0 documentation @@ -44,7 +44,7 @@ - + @@ -81,7 +81,7 @@ - + @@ -144,7 +144,7 @@ -

MNE-BIDS 0.17.0.dev14+g3492fa01 documentation

+

MNE-BIDS 0.17.0.dev15+g3f59b0e0 documentation

@@ -640,7 +640,7 @@

Basic anonymizationSpecifying subject IDsSpecifying subject IDsSpecifying subject IDs @@ -903,9 +903,9 @@

ReproducibilityTotal running time of the script: (0 minutes 12.569 seconds)

+

Total running time of the script: (0 minutes 11.261 seconds)

 @@ -563,8 +563,6 @@

Download the data
Using default location ~/mne_data for EEGBCI...
-Downloading EEGBCI data
-Download complete in 02s (1.2 MB)
 
 [PosixPath('/home/circleci/mne_data/MNE-eegbci-data/files/eegmmidb/1.0.0/S001/S001R02.edf')]
@@ -584,6 +582,13 @@

Download the dataEuropean Data Format with @@ -646,881 +651,6 @@

Convert to BIDS
Using default location ~/mne_data for testing...
-Dataset testing version 0.0 out of date, latest version is 0.156
-
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 <Figure size 640x640 with 1 Axes>
@@ -1968,7 +1098,7 @@

Cite mne-bidshttps://bids-standard.github.io/bids-validator/

Command line tool: https://www.npmjs.com/package/bids-validator

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Total running time of the script: (2 minutes 28.190 seconds)

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Total running time of the script: (0 minutes 0.349 seconds)

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Total running time of the script: (0 minutes 2.147 seconds)

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Total running time of the script: (0 minutes 1.863 seconds)

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Downloading EEGBCI data
-Download complete in 11s (7.4 MB)
-Downloading EEGBCI data
-Download complete in 11s (7.3 MB)
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Let us loop over the subjects and create BIDS-compatible folder

# Make a path where we can save the data to
 bids_root = op.join(mne_data_dir, "eegmmidb_bids_group_conversion")
@@ -923,7 +917,7 @@
 0.0) were used in analysis (0.0 +/- 0.0 were removed from analysis).
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Total running time of the script: (0 minutes 23.166 seconds)

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Total running time of the script: (0 minutes 1.222 seconds)

This should be very similar to the ds000248 dataset_description.json!

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Total running time of the script: (0 minutes 3.903 seconds)

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Total running time of the script: (0 minutes 3.565 seconds)