diff --git a/dev/.buildinfo b/dev/.buildinfo index 19714783a..09dfb3142 100644 --- a/dev/.buildinfo +++ b/dev/.buildinfo @@ -1,4 +1,4 @@ # Sphinx build info version 1 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done. -config: ea9cba626ef42c051e3ea60f81fcb445 +config: 260e07dd1f774787c78be8eca66e450a tags: 645f666f9bcd5a90fca523b33c5a78b7 diff --git a/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip b/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip index d415e0e6f..4ebf984b0 100644 Binary files a/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip and b/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip differ diff --git a/dev/_downloads/1eed244ec75de0e6a9392a728e24219b/convert_group_studies.py b/dev/_downloads/1eed244ec75de0e6a9392a728e24219b/convert_group_studies.py index 0990762e0..1b40010fc 100644 --- a/dev/_downloads/1eed244ec75de0e6a9392a728e24219b/convert_group_studies.py +++ b/dev/_downloads/1eed244ec75de0e6a9392a728e24219b/convert_group_studies.py @@ -2,13 +2,14 @@ ===================================== 05. BIDS conversion for group studies ===================================== + Here, we show how to do BIDS conversion for group studies. We will use the `EEG Motor Movement/Imagery Dataset `_ available on the PhysioBank database. We recommend that you go through the more basic BIDS conversion example before checking out this group conversion example: :ref:`ex-convert-mne-sample` -""" +""" # noqa: E501 D205 D400 # Authors: The MNE-BIDS developers # SPDX-License-Identifier: BSD-3-Clause diff --git a/dev/_downloads/241c30601b8e062b34a8b85829a39a45/convert_group_studies.ipynb b/dev/_downloads/241c30601b8e062b34a8b85829a39a45/convert_group_studies.ipynb index e75f4781e..ff8d256a2 100644 --- a/dev/_downloads/241c30601b8e062b34a8b85829a39a45/convert_group_studies.ipynb +++ b/dev/_downloads/241c30601b8e062b34a8b85829a39a45/convert_group_studies.ipynb @@ -4,7 +4,7 @@ "cell_type": "markdown", "metadata": {}, "source": [ - "\n# 05. BIDS conversion for group studies\nHere, we show how to do BIDS conversion for group studies.\nWe will use the\n[EEG Motor Movement/Imagery Dataset](https://doi.org/10.13026/C28G6P)\navailable on the PhysioBank database.\nWe recommend that you go through the more basic BIDS conversion example before\nchecking out this group conversion example: `ex-convert-mne-sample`\n" + "\n# 05. BIDS conversion for group studies\n\nHere, we show how to do BIDS conversion for group studies.\nWe will use the\n[EEG Motor Movement/Imagery Dataset](https://doi.org/10.13026/C28G6P)\navailable on the PhysioBank database.\nWe recommend that you go through the more basic BIDS conversion example before\nchecking out this group conversion example: `ex-convert-mne-sample`\n" ] }, { diff --git a/dev/_downloads/268d987293d4ee80f1e0d3ca84cf1bd4/read_bids_datasets.zip b/dev/_downloads/268d987293d4ee80f1e0d3ca84cf1bd4/read_bids_datasets.zip index 1d2464cdb..d278ca2b7 100644 Binary files a/dev/_downloads/268d987293d4ee80f1e0d3ca84cf1bd4/read_bids_datasets.zip and b/dev/_downloads/268d987293d4ee80f1e0d3ca84cf1bd4/read_bids_datasets.zip differ diff --git a/dev/_downloads/2d16cae3d55264a4b7d58ed70766e580/mark_bad_channels.zip b/dev/_downloads/2d16cae3d55264a4b7d58ed70766e580/mark_bad_channels.zip index 2609122ce..ee50837e0 100644 Binary files a/dev/_downloads/2d16cae3d55264a4b7d58ed70766e580/mark_bad_channels.zip and b/dev/_downloads/2d16cae3d55264a4b7d58ed70766e580/mark_bad_channels.zip differ diff --git a/dev/_downloads/3556547a51e51e9556bdd40badb8d4c8/mark_bad_channels.py b/dev/_downloads/3556547a51e51e9556bdd40badb8d4c8/mark_bad_channels.py index bd6ad7630..ce4e45309 100644 --- a/dev/_downloads/3556547a51e51e9556bdd40badb8d4c8/mark_bad_channels.py +++ b/dev/_downloads/3556547a51e51e9556bdd40badb8d4c8/mark_bad_channels.py @@ -5,7 +5,7 @@ You can use MNE-BIDS interactively inspect your MEG or (i)EEG data. Problematic channels can be marked as "bad", for example if the connected -sensor produced mostly noise – or no signal at all. Similarly, you can declare +sensor produced mostly noise - or no signal at all. Similarly, you can declare channels as "good", should you discover they were incorrectly marked as bad. Bad channel selection can also be performed non-interactively. diff --git a/dev/_downloads/4643fc773d02dab3aa626f7f7d767950/convert_mne_sample.zip b/dev/_downloads/4643fc773d02dab3aa626f7f7d767950/convert_mne_sample.zip index 72d55103e..fde85a3ea 100644 Binary files a/dev/_downloads/4643fc773d02dab3aa626f7f7d767950/convert_mne_sample.zip and b/dev/_downloads/4643fc773d02dab3aa626f7f7d767950/convert_mne_sample.zip differ diff --git a/dev/_downloads/49d15d935de3a358386688419eb26d73/rename_brainvision_files.py b/dev/_downloads/49d15d935de3a358386688419eb26d73/rename_brainvision_files.py index 8c479dafe..a38bd46e2 100644 --- a/dev/_downloads/49d15d935de3a358386688419eb26d73/rename_brainvision_files.py +++ b/dev/_downloads/49d15d935de3a358386688419eb26d73/rename_brainvision_files.py @@ -27,7 +27,7 @@ for the :ref:`Python Command Line Interface `. .. _BrainVision data format: https://www.brainproducts.com/support-resources/brainvision-core-data-format-1-0/ -""" # noqa:E501 +""" # noqa: E501 D205 D400 # Authors: The MNE-BIDS developers # SPDX-License-Identifier: BSD-3-Clause diff --git a/dev/_downloads/4b11a3ce6cfd9d8cf2b976f8386a2f8f/bidspath.py b/dev/_downloads/4b11a3ce6cfd9d8cf2b976f8386a2f8f/bidspath.py index 943821398..0430e4c72 100644 --- a/dev/_downloads/4b11a3ce6cfd9d8cf2b976f8386a2f8f/bidspath.py +++ b/dev/_downloads/4b11a3ce6cfd9d8cf2b976f8386a2f8f/bidspath.py @@ -7,7 +7,7 @@ BIDSPath is MNE-BIDS's working horse when it comes to file and folder operations. Learn here how to use it. -""" +""" # noqa: D400 # Authors: The MNE-BIDS developers # SPDX-License-Identifier: BSD-3-Clause diff --git a/dev/_downloads/4c4fb656ad2ed5296dbabd0c14fa2b02/convert_nirs_to_bids.zip b/dev/_downloads/4c4fb656ad2ed5296dbabd0c14fa2b02/convert_nirs_to_bids.zip index a44f388a3..43cdee1a5 100644 Binary files a/dev/_downloads/4c4fb656ad2ed5296dbabd0c14fa2b02/convert_nirs_to_bids.zip and b/dev/_downloads/4c4fb656ad2ed5296dbabd0c14fa2b02/convert_nirs_to_bids.zip differ diff --git a/dev/_downloads/5d54d38fa89e77a34bdfd9413b4fbe4f/convert_group_studies.zip b/dev/_downloads/5d54d38fa89e77a34bdfd9413b4fbe4f/convert_group_studies.zip index e70c48b63..60af80607 100644 Binary files a/dev/_downloads/5d54d38fa89e77a34bdfd9413b4fbe4f/convert_group_studies.zip and b/dev/_downloads/5d54d38fa89e77a34bdfd9413b4fbe4f/convert_group_studies.zip differ diff --git a/dev/_downloads/5eebd75ee4f8ffd30e34a83e87d0e28b/read_bids_datasets.py b/dev/_downloads/5eebd75ee4f8ffd30e34a83e87d0e28b/read_bids_datasets.py index 00263d3b8..995c8c661 100644 --- a/dev/_downloads/5eebd75ee4f8ffd30e34a83e87d0e28b/read_bids_datasets.py +++ b/dev/_downloads/5eebd75ee4f8ffd30e34a83e87d0e28b/read_bids_datasets.py @@ -22,8 +22,7 @@ In this tutorial, we show how ``read_raw_bids`` can be used to load and inspect BIDS-formatted data. - -""" +""" # noqa: D400 # Authors: The MNE-BIDS developers # SPDX-License-Identifier: BSD-3-Clause diff --git a/dev/_downloads/6a5f0c10c42d095fdc0217cd0f22c214/rename_brainvision_files.zip b/dev/_downloads/6a5f0c10c42d095fdc0217cd0f22c214/rename_brainvision_files.zip index ebf186c86..966d0cd54 100644 Binary files a/dev/_downloads/6a5f0c10c42d095fdc0217cd0f22c214/rename_brainvision_files.zip and b/dev/_downloads/6a5f0c10c42d095fdc0217cd0f22c214/rename_brainvision_files.zip differ diff --git a/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip b/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip index c3bb22b39..18de2d4d7 100644 Binary files a/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip and b/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip differ diff --git a/dev/_downloads/701f5b32d08455f1c1e98b7ab1715881/bidspath.zip b/dev/_downloads/701f5b32d08455f1c1e98b7ab1715881/bidspath.zip index fa41dc493..45ba27e57 100644 Binary files a/dev/_downloads/701f5b32d08455f1c1e98b7ab1715881/bidspath.zip and b/dev/_downloads/701f5b32d08455f1c1e98b7ab1715881/bidspath.zip differ diff --git a/dev/_downloads/7d2e2f052d27d212228870d603a1aca7/convert_ieeg_to_bids.zip b/dev/_downloads/7d2e2f052d27d212228870d603a1aca7/convert_ieeg_to_bids.zip index 95a41df45..517dd0a6b 100644 Binary files a/dev/_downloads/7d2e2f052d27d212228870d603a1aca7/convert_ieeg_to_bids.zip and b/dev/_downloads/7d2e2f052d27d212228870d603a1aca7/convert_ieeg_to_bids.zip differ diff --git a/dev/_downloads/86851480108d4b249520df3993b0222b/convert_mne_sample.py b/dev/_downloads/86851480108d4b249520df3993b0222b/convert_mne_sample.py index 0fa6ea4fe..32be750a3 100644 --- a/dev/_downloads/86851480108d4b249520df3993b0222b/convert_mne_sample.py +++ b/dev/_downloads/86851480108d4b249520df3993b0222b/convert_mne_sample.py @@ -13,7 +13,7 @@ .. _BIDS dataset_description.json definition: https://bids-specification.readthedocs.io/en/latest/modality-agnostic-files.html#dataset-description .. _ds000248 dataset_description.json: https://github.com/sappelhoff/bids-examples/blob/master/ds000248/dataset_description.json -""" # noqa: D400 D205 E501 +""" # noqa: D400 E501 # Authors: The MNE-BIDS developers # SPDX-License-Identifier: BSD-3-Clause diff --git a/dev/_downloads/8a652dc37d1d38cf986f15eab46d0f7d/update_bids_datasets.py b/dev/_downloads/8a652dc37d1d38cf986f15eab46d0f7d/update_bids_datasets.py index 9e2383972..8a8aed2c5 100644 --- a/dev/_downloads/8a652dc37d1d38cf986f15eab46d0f7d/update_bids_datasets.py +++ b/dev/_downloads/8a652dc37d1d38cf986f15eab46d0f7d/update_bids_datasets.py @@ -9,7 +9,7 @@ In this tutorial, we show how ``update_sidecar_json`` can be used to update and modify BIDS-formatted data. -""" +""" # noqa: D205 D400 # Authors: The MNE-BIDS developers # SPDX-License-Identifier: BSD-3-Clause diff --git a/dev/_downloads/96ed94148ab6ae1fb5c5140a74461a04/update_bids_datasets.zip b/dev/_downloads/96ed94148ab6ae1fb5c5140a74461a04/update_bids_datasets.zip index 222bc2e98..e0bf4c717 100644 Binary files a/dev/_downloads/96ed94148ab6ae1fb5c5140a74461a04/update_bids_datasets.zip and b/dev/_downloads/96ed94148ab6ae1fb5c5140a74461a04/update_bids_datasets.zip differ diff --git a/dev/_downloads/9e546b1b08e67ca7572c8e76f5992643/convert_nirs_to_bids.py b/dev/_downloads/9e546b1b08e67ca7572c8e76f5992643/convert_nirs_to_bids.py index 8553f52ba..1400169ee 100644 --- a/dev/_downloads/9e546b1b08e67ca7572c8e76f5992643/convert_nirs_to_bids.py +++ b/dev/_downloads/9e546b1b08e67ca7572c8e76f5992643/convert_nirs_to_bids.py @@ -15,8 +15,7 @@ 4. Cite ``mne-bids``. .. currentmodule:: mne_bids - -""" # noqa: E501 +""" # noqa: E501 D205 D400 # Authors: The MNE-BIDS developers # SPDX-License-Identifier: BSD-3-Clause diff --git a/dev/_downloads/a577037ece7a732b0607a269316e55b8/convert_ieeg_to_bids.py b/dev/_downloads/a577037ece7a732b0607a269316e55b8/convert_ieeg_to_bids.py index 32db9d8ca..74812f627 100644 --- a/dev/_downloads/a577037ece7a732b0607a269316e55b8/convert_ieeg_to_bids.py +++ b/dev/_downloads/a577037ece7a732b0607a269316e55b8/convert_ieeg_to_bids.py @@ -38,8 +38,7 @@ .. _appendix VIII: https://bids-specification.readthedocs.io/en/stable/appendices/coordinate-systems.html .. _background on FreeSurfer: https://mne.tools/dev/auto_tutorials/source-modeling/plot_background_freesurfer_mne .. _MNE-Python coordinate frames: https://mne.tools/dev/auto_tutorials/source-modeling/plot_source_alignment.html - -""" # noqa: E501 +""" # noqa: E501 D400 # Authors: The MNE-BIDS developers # SPDX-License-Identifier: BSD-3-Clause diff --git a/dev/_downloads/b143d969421db5e73a9339985e158e7a/convert_mri_and_trans.py b/dev/_downloads/b143d969421db5e73a9339985e158e7a/convert_mri_and_trans.py index 5bd3df88e..807974d82 100644 --- a/dev/_downloads/b143d969421db5e73a9339985e158e7a/convert_mri_and_trans.py +++ b/dev/_downloads/b143d969421db5e73a9339985e158e7a/convert_mri_and_trans.py @@ -26,8 +26,7 @@ .. note:: For this example you will need to install ``matplotlib`` and ``nilearn`` on top of your usual ``mne-bids`` installation. - -""" +""" # noqa: E501 D205 D400 # Authors: The MNE-BIDS developers # SPDX-License-Identifier: BSD-3-Clause diff --git a/dev/_downloads/b5991261ea1afda327daaddd3f69dfac/create_bids_folder.zip b/dev/_downloads/b5991261ea1afda327daaddd3f69dfac/create_bids_folder.zip index 84806c5be..26c38eb72 100644 Binary files a/dev/_downloads/b5991261ea1afda327daaddd3f69dfac/create_bids_folder.zip and b/dev/_downloads/b5991261ea1afda327daaddd3f69dfac/create_bids_folder.zip differ diff --git a/dev/_downloads/b637816c94a7cf4caf2ce4be824a809e/create_bids_folder.py b/dev/_downloads/b637816c94a7cf4caf2ce4be824a809e/create_bids_folder.py index b050b97b6..cdca659f0 100644 --- a/dev/_downloads/b637816c94a7cf4caf2ce4be824a809e/create_bids_folder.py +++ b/dev/_downloads/b637816c94a7cf4caf2ce4be824a809e/create_bids_folder.py @@ -11,7 +11,7 @@ You may automatically convert Raw objects to BIDS-compatible files with ``write_raw_bids``. This example is for manually creating files/folders. -""" +""" # noqa: E501 D205 D400 # Authors: The MNE-BIDS developers # SPDX-License-Identifier: BSD-3-Clause diff --git a/dev/_downloads/b7d549fc992398180d012ad4f3a73e8d/convert_eeg_to_bids.py b/dev/_downloads/b7d549fc992398180d012ad4f3a73e8d/convert_eeg_to_bids.py index b3191bf8c..1ad26448f 100644 --- a/dev/_downloads/b7d549fc992398180d012ad4f3a73e8d/convert_eeg_to_bids.py +++ b/dev/_downloads/b7d549fc992398180d012ad4f3a73e8d/convert_eeg_to_bids.py @@ -19,8 +19,7 @@ .. _BrainVision format: https://www.brainproducts.com/support-resources/brainvision-core-data-format-1-0/ .. _CapTrak: https://www.fieldtriptoolbox.org/faq/coordsys/#details-of-the-captrak-coordinate-system - -""" # noqa: E501 +""" # noqa: E501 D205 D400 # Authors: The MNE-BIDS developers # SPDX-License-Identifier: BSD-3-Clause diff --git a/dev/_downloads/bcdfe0d0e220cf6da56beb8f9163c326/mark_bad_channels.ipynb b/dev/_downloads/bcdfe0d0e220cf6da56beb8f9163c326/mark_bad_channels.ipynb index ed5ca3dc5..991489411 100644 --- a/dev/_downloads/bcdfe0d0e220cf6da56beb8f9163c326/mark_bad_channels.ipynb +++ b/dev/_downloads/bcdfe0d0e220cf6da56beb8f9163c326/mark_bad_channels.ipynb @@ -4,7 +4,7 @@ "cell_type": "markdown", "metadata": {}, "source": [ - "\n# 03. Interactive data inspection and bad channel selection\n\nYou can use MNE-BIDS interactively inspect your MEG or (i)EEG data.\nProblematic channels can be marked as \"bad\", for example if the connected\nsensor produced mostly noise \u2013 or no signal at all. Similarly, you can declare\nchannels as \"good\", should you discover they were incorrectly marked as bad.\nBad channel selection can also be performed non-interactively.\n\nFurthermore, you can view and edit the experimental events and mark time\nsegments as \"bad\".\n\n" + "\n# 03. Interactive data inspection and bad channel selection\n\nYou can use MNE-BIDS interactively inspect your MEG or (i)EEG data.\nProblematic channels can be marked as \"bad\", for example if the connected\nsensor produced mostly noise - or no signal at all. Similarly, you can declare\nchannels as \"good\", should you discover they were incorrectly marked as bad.\nBad channel selection can also be performed non-interactively.\n\nFurthermore, you can view and edit the experimental events and mark time\nsegments as \"bad\".\n\n" ] }, { diff --git a/dev/_downloads/bdc50d7de6c227351cc05fc714c0362c/anonymize_dataset.zip b/dev/_downloads/bdc50d7de6c227351cc05fc714c0362c/anonymize_dataset.zip index 33709a5fd..7ea1f79f5 100644 Binary files a/dev/_downloads/bdc50d7de6c227351cc05fc714c0362c/anonymize_dataset.zip and b/dev/_downloads/bdc50d7de6c227351cc05fc714c0362c/anonymize_dataset.zip differ diff --git a/dev/_downloads/c3986e0cfd29a19505f36bab33dcf723/convert_eeg_to_bids.zip b/dev/_downloads/c3986e0cfd29a19505f36bab33dcf723/convert_eeg_to_bids.zip index 6d9498def..2aacc3c7b 100644 Binary files a/dev/_downloads/c3986e0cfd29a19505f36bab33dcf723/convert_eeg_to_bids.zip and b/dev/_downloads/c3986e0cfd29a19505f36bab33dcf723/convert_eeg_to_bids.zip differ diff --git a/dev/_downloads/d90b2c92d1a1159e30b2143cd51843b4/convert_mri_and_trans.zip b/dev/_downloads/d90b2c92d1a1159e30b2143cd51843b4/convert_mri_and_trans.zip index 34ca3ebe2..664458586 100644 Binary files a/dev/_downloads/d90b2c92d1a1159e30b2143cd51843b4/convert_mri_and_trans.zip and b/dev/_downloads/d90b2c92d1a1159e30b2143cd51843b4/convert_mri_and_trans.zip differ diff --git a/dev/_downloads/f336dfe6a8ab84474813b87342e0c0a3/convert_empty_room.py b/dev/_downloads/f336dfe6a8ab84474813b87342e0c0a3/convert_empty_room.py index 2c6767d77..09c496bad 100644 --- a/dev/_downloads/f336dfe6a8ab84474813b87342e0c0a3/convert_empty_room.py +++ b/dev/_downloads/f336dfe6a8ab84474813b87342e0c0a3/convert_empty_room.py @@ -7,7 +7,7 @@ This example demonstrates how to store empty room data "manually" in the BIDS format and how to retrieve them. -""" +""" # noqa: E501 D400 # Authors: The MNE-BIDS developers # SPDX-License-Identifier: BSD-3-Clause diff --git a/dev/_downloads/f6baa7da9ece655f45f704c75843a8ff/convert_empty_room.zip b/dev/_downloads/f6baa7da9ece655f45f704c75843a8ff/convert_empty_room.zip index d8d67da13..a182dad6a 100644 Binary files a/dev/_downloads/f6baa7da9ece655f45f704c75843a8ff/convert_empty_room.zip and b/dev/_downloads/f6baa7da9ece655f45f704c75843a8ff/convert_empty_room.zip differ diff --git a/dev/_modules/index.html b/dev/_modules/index.html index c5de895b9..0b375a1d7 100644 --- a/dev/_modules/index.html +++ b/dev/_modules/index.html @@ -7,7 +7,7 @@ - Overview: module code — MNE-BIDS 0.16.0.dev17+g91655260 documentation + Overview: module code — MNE-BIDS 0.16.0.dev18+g1c9361cc documentation @@ -40,7 +40,7 @@ - + @@ -147,7 +147,7 @@ -

MNE-BIDS 0.16.0.dev17+g91655260 documentation

+

MNE-BIDS 0.16.0.dev18+g1c9361cc documentation

diff --git a/dev/_modules/mne_bids/copyfiles.html b/dev/_modules/mne_bids/copyfiles.html index 8fd45d164..5f8f61390 100644 --- a/dev/_modules/mne_bids/copyfiles.html +++ b/dev/_modules/mne_bids/copyfiles.html @@ -7,7 +7,7 @@ - mne_bids.copyfiles — MNE-BIDS 0.16.0.dev17+g91655260 documentation + mne_bids.copyfiles — MNE-BIDS 0.16.0.dev18+g1c9361cc documentation @@ -40,7 +40,7 @@ - + @@ -147,7 +147,7 @@ -

MNE-BIDS 0.16.0.dev17+g91655260 documentation

+

MNE-BIDS 0.16.0.dev18+g1c9361cc documentation

diff --git a/dev/_modules/mne_bids/dig.html b/dev/_modules/mne_bids/dig.html index c0a428a3d..9d893207f 100644 --- a/dev/_modules/mne_bids/dig.html +++ b/dev/_modules/mne_bids/dig.html @@ -7,7 +7,7 @@ - mne_bids.dig — MNE-BIDS 0.16.0.dev17+g91655260 documentation + mne_bids.dig — MNE-BIDS 0.16.0.dev18+g1c9361cc documentation @@ -40,7 +40,7 @@ - + @@ -147,7 +147,7 @@ -

MNE-BIDS 0.16.0.dev17+g91655260 documentation

+

MNE-BIDS 0.16.0.dev18+g1c9361cc documentation

diff --git a/dev/_modules/mne_bids/inspect.html b/dev/_modules/mne_bids/inspect.html index 510f92f12..236652f00 100644 --- a/dev/_modules/mne_bids/inspect.html +++ b/dev/_modules/mne_bids/inspect.html @@ -7,7 +7,7 @@ - mne_bids.inspect — MNE-BIDS 0.16.0.dev17+g91655260 documentation + mne_bids.inspect — MNE-BIDS 0.16.0.dev18+g1c9361cc documentation @@ -40,7 +40,7 @@ - + @@ -147,7 +147,7 @@ -

MNE-BIDS 0.16.0.dev17+g91655260 documentation

+

MNE-BIDS 0.16.0.dev18+g1c9361cc documentation

diff --git a/dev/_modules/mne_bids/path.html b/dev/_modules/mne_bids/path.html index b71ed693c..7a8d35b0e 100644 --- a/dev/_modules/mne_bids/path.html +++ b/dev/_modules/mne_bids/path.html @@ -7,7 +7,7 @@ - mne_bids.path — MNE-BIDS 0.16.0.dev17+g91655260 documentation + mne_bids.path — MNE-BIDS 0.16.0.dev18+g1c9361cc documentation @@ -40,7 +40,7 @@ - + @@ -147,7 +147,7 @@ -

MNE-BIDS 0.16.0.dev17+g91655260 documentation

+

MNE-BIDS 0.16.0.dev18+g1c9361cc documentation

@@ -2420,13 +2420,13 @@

Source code for mne_bids.path

     """
     # Take all possible data types from "entity" table
     # (Appendix in BIDS spec)
-    # https://bids-specification.readthedocs.io/en/latest/appendices/entity-table.html  # noqa
+    # https://bids-specification.readthedocs.io/en/latest/appendices/entity-table.html
     datatype_list = ("anat", "func", "dwi", "fmap", "beh", "meg", "eeg", "ieeg", "nirs")
     datatypes = list()
     for root, dirs, files in os.walk(root):
-        for dir in dirs:
-            if dir in datatype_list and dir not in datatypes:
-                datatypes.append(dir)
+        for _dir in dirs:
+            if _dir in datatype_list and _dir not in datatypes:
+                datatypes.append(_dir)
 
     return datatypes
diff --git a/dev/_modules/mne_bids/read.html b/dev/_modules/mne_bids/read.html index 6ce052513..223162386 100644 --- a/dev/_modules/mne_bids/read.html +++ b/dev/_modules/mne_bids/read.html @@ -7,7 +7,7 @@ - mne_bids.read — MNE-BIDS 0.16.0.dev17+g91655260 documentation + mne_bids.read — MNE-BIDS 0.16.0.dev18+g1c9361cc documentation @@ -40,7 +40,7 @@ - + @@ -147,7 +147,7 @@ -

MNE-BIDS 0.16.0.dev17+g91655260 documentation

+

MNE-BIDS 0.16.0.dev18+g1c9361cc documentation

@@ -1140,7 +1140,7 @@

Source code for mne_bids.read

 
         if updated_ch_type is None:
             # XXX Try again with uppercase spelling – this should be removed
-            # XXX once https://github.com/bids-standard/bids-validator/issues/1018  # noqa:E501
+            # XXX once https://github.com/bids-standard/bids-validator/issues/1018
             # XXX has been resolved.
             # XXX x-ref https://github.com/mne-tools/mne-bids/issues/481
             updated_ch_type = bids_to_mne_ch_types.get(ch_type.upper(), None)
diff --git a/dev/_modules/mne_bids/report/_report.html b/dev/_modules/mne_bids/report/_report.html
index d793b8106..2d0d1f3b1 100644
--- a/dev/_modules/mne_bids/report/_report.html
+++ b/dev/_modules/mne_bids/report/_report.html
@@ -7,7 +7,7 @@
   
     
     
-    mne_bids.report._report — MNE-BIDS 0.16.0.dev17+g91655260 documentation
+    mne_bids.report._report — MNE-BIDS 0.16.0.dev18+g1c9361cc documentation
   
   
   
@@ -40,7 +40,7 @@
 
   
 
-    
+    
     
     
     
@@ -147,7 +147,7 @@
   
   
   
-    
MNE-BIDS 0.16.0.dev17+g91655260 documentation

+    
MNE-BIDS 0.16.0.dev18+g1c9361cc documentation
@@ -559,12 +559,12 @@

Source code for mne_bids.report._report

     return "{}, and {}".format(", ".join(listed[:-1]), listed[-1])
 
 
-def _range_str(minval, maxval, meanval, stdval, n_unknown, type):
+def _range_str(minval, maxval, meanval, stdval, n_unknown, typ):
     if minval == "n/a":
         return "ages all unknown"
 
     if n_unknown > 0:
-        unknown_str = f"; {n_unknown} with unknown {type}"
+        unknown_str = f"; {n_unknown} with unknown {typ}"
     else:
         unknown_str = ""
     return (
diff --git a/dev/_modules/mne_bids/sidecar_updates.html b/dev/_modules/mne_bids/sidecar_updates.html
index 0296ecb96..137258bdc 100644
--- a/dev/_modules/mne_bids/sidecar_updates.html
+++ b/dev/_modules/mne_bids/sidecar_updates.html
@@ -7,7 +7,7 @@
   
     
     
-    mne_bids.sidecar_updates — MNE-BIDS 0.16.0.dev17+g91655260 documentation
+    mne_bids.sidecar_updates — MNE-BIDS 0.16.0.dev18+g1c9361cc documentation
   
   
   
@@ -40,7 +40,7 @@
 
   
 
-    
+    
     
     
     
@@ -147,7 +147,7 @@
   
   
   
-    
MNE-BIDS 0.16.0.dev17+g91655260 documentation

+    
MNE-BIDS 0.16.0.dev18+g1c9361cc documentation
diff --git a/dev/_modules/mne_bids/stats.html b/dev/_modules/mne_bids/stats.html index 75341d2dd..ca81c15ca 100644 --- a/dev/_modules/mne_bids/stats.html +++ b/dev/_modules/mne_bids/stats.html @@ -7,7 +7,7 @@ - mne_bids.stats — MNE-BIDS 0.16.0.dev17+g91655260 documentation + mne_bids.stats — MNE-BIDS 0.16.0.dev18+g1c9361cc documentation @@ -40,7 +40,7 @@ - + @@ -147,7 +147,7 @@ -

MNE-BIDS 0.16.0.dev17+g91655260 documentation

+

MNE-BIDS 0.16.0.dev18+g1c9361cc documentation

diff --git a/dev/_modules/mne_bids/utils.html b/dev/_modules/mne_bids/utils.html index 73b1c0ead..9f0953d6e 100644 --- a/dev/_modules/mne_bids/utils.html +++ b/dev/_modules/mne_bids/utils.html @@ -7,7 +7,7 @@ - mne_bids.utils — MNE-BIDS 0.16.0.dev17+g91655260 documentation + mne_bids.utils — MNE-BIDS 0.16.0.dev18+g1c9361cc documentation @@ -40,7 +40,7 @@ - + @@ -147,7 +147,7 @@ -

MNE-BIDS 0.16.0.dev17+g91655260 documentation

+

MNE-BIDS 0.16.0.dev18+g1c9361cc documentation

@@ -1030,7 +1030,7 @@

Source code for mne_bids.utils

 
 def _import_nibabel(why="work with MRI data"):
     try:
-        import nibabel  # noqa
+        import nibabel
     except ImportError as exc:
         raise exc.__class__(
             f"nibabel is required to {why} but could not be imported, " f"got: {exc}"
@@ -1044,7 +1044,7 @@ 
Source code for mne_bids.utils
     category=RuntimeWarning,
     module="mne_bids",
     ignore_namespaces=("mne", "mne_bids"),
-):  # noqa: D103
+):
     """Emit a warning."""
     _warn(
         message,
diff --git a/dev/_modules/mne_bids/write.html b/dev/_modules/mne_bids/write.html
index a85ff8b82..97c8ebc28 100644
--- a/dev/_modules/mne_bids/write.html
+++ b/dev/_modules/mne_bids/write.html
@@ -7,7 +7,7 @@
   
     
     
-    mne_bids.write — MNE-BIDS 0.16.0.dev17+g91655260 documentation
+    mne_bids.write — MNE-BIDS 0.16.0.dev18+g1c9361cc documentation
   
   
   
@@ -40,7 +40,7 @@
 
   
 
-    
+    
     
     
     
@@ -147,7 +147,7 @@
   
   
   
-    
MNE-BIDS 0.16.0.dev17+g91655260 documentation

+    
MNE-BIDS 0.16.0.dev18+g1c9361cc documentation

   
 

     
@@ -3209,7 +3209,7 @@ 
Source code for mne_bids.write
     ...                      root=op.join(data_path, 'mne_bids')) # doctest: +SKIP
     >>> write_meg_crosstalk(crosstalk_fname, bids_path) # doctest: +SKIP
     Writing crosstalk file to ...sub-01_ses-test_acq-crosstalk_meg.fif
-    """  # noqa: E501
+    """
     if bids_path.root is None or bids_path.subject is None:
         raise ValueError("bids_path must have root and subject set.")
     if bids_path.datatype not in (None, "meg"):
diff --git a/dev/_static/documentation_options.js b/dev/_static/documentation_options.js
index 1311470b6..9f263cf71 100644
--- a/dev/_static/documentation_options.js
+++ b/dev/_static/documentation_options.js
@@ -1,5 +1,5 @@
 const DOCUMENTATION_OPTIONS = {
-    VERSION: '0.16.0.dev17+g91655260',
+    VERSION: '0.16.0.dev18+g1c9361cc',
     LANGUAGE: 'en',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',
diff --git a/dev/api.html b/dev/api.html
index abbf4bcd8..41fc9bd1c 100644
--- a/dev/api.html
+++ b/dev/api.html
@@ -8,7 +8,7 @@
     
     
 
-    API Documentation — MNE-BIDS 0.16.0.dev17+g91655260 documentation
+    API Documentation — MNE-BIDS 0.16.0.dev18+g1c9361cc documentation
   
   
   
@@ -41,7 +41,7 @@
 
   
 
-    
+    
     
     
     
@@ -150,7 +150,7 @@
   
   
   
-    
MNE-BIDS 0.16.0.dev17+g91655260 documentation

+    
MNE-BIDS 0.16.0.dev18+g1c9361cc documentation

   
 

     
diff --git a/dev/authors.html b/dev/authors.html
index 9c173cd70..31758d981 100644
--- a/dev/authors.html
+++ b/dev/authors.html
@@ -8,7 +8,7 @@
     
     
 
-    <no title> — MNE-BIDS 0.16.0.dev17+g91655260 documentation
+    <no title> — MNE-BIDS 0.16.0.dev18+g1c9361cc documentation
   
   
   
@@ -41,7 +41,7 @@
 
   
 
-    
+    
     
     
     
@@ -148,7 +148,7 @@
   
   
   
-    
MNE-BIDS 0.16.0.dev17+g91655260 documentation

+    
MNE-BIDS 0.16.0.dev18+g1c9361cc documentation
diff --git a/dev/auto_examples/anonymize_dataset.html b/dev/auto_examples/anonymize_dataset.html index ce652081e..d617db874 100644 --- a/dev/auto_examples/anonymize_dataset.html +++ b/dev/auto_examples/anonymize_dataset.html @@ -8,7 +8,7 @@ - 13. Anonymizing a BIDS dataset — MNE-BIDS 0.16.0.dev17+g91655260 documentation + 13. Anonymizing a BIDS dataset — MNE-BIDS 0.16.0.dev18+g1c9361cc documentation @@ -41,7 +41,7 @@ - + @@ -151,7 +151,7 @@ -

MNE-BIDS 0.16.0.dev17+g91655260 documentation

+

MNE-BIDS 0.16.0.dev18+g1c9361cc documentation

@@ -675,7 +675,7 @@

Basic anonymizationSpecifying subject IDsSpecifying subject IDsSpecifying subject IDs @@ -930,9 +930,9 @@

ReproducibilityTotal running time of the script: (0 minutes 11.825 seconds)

+

Total running time of the script: (0 minutes 11.702 seconds)

 @@ -1127,7 +1127,7 @@

Cite mne-bidshttps://bids-standard.github.io/bids-validator/

Command line tool: https://www.npmjs.com/package/bids-validator

-

Total running time of the script: (0 minutes 0.353 seconds)

+

Total running time of the script: (0 minutes 0.358 seconds)

-

Total running time of the script: (0 minutes 2.324 seconds)

+

Total running time of the script: (0 minutes 2.134 seconds)

-

Total running time of the script: (0 minutes 1.253 seconds)

+

Total running time of the script: (0 minutes 1.281 seconds)

This should be very similar to the ds000248 dataset_description.json!

-

Total running time of the script: (0 minutes 3.865 seconds)

+

Total running time of the script: (0 minutes 3.889 seconds)

-

Total running time of the script: (0 minutes 12.813 seconds)

+

Total running time of the script: (0 minutes 13.098 seconds)