diff --git a/dev/.buildinfo b/dev/.buildinfo index 759f533ec..5843601de 100644 --- a/dev/.buildinfo +++ b/dev/.buildinfo @@ -1,4 +1,4 @@ # Sphinx build info version 1 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done. -config: 78dd81a548e2ebb3d89a89e7ec639028 +config: 570aec689683546ee3c7091db75f71da tags: 645f666f9bcd5a90fca523b33c5a78b7 diff --git a/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip b/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip index bf996d8cc..18481103a 100644 Binary files a/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip and b/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip differ diff --git a/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip b/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip index 17eb231cd..a6a4331b6 100644 Binary files a/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip and b/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip differ diff --git a/dev/_images/sphx_glr_convert_eeg_to_bids_001.png b/dev/_images/sphx_glr_convert_eeg_to_bids_001.png index d6c9fe5c8..984fbf21d 100644 Binary files a/dev/_images/sphx_glr_convert_eeg_to_bids_001.png and b/dev/_images/sphx_glr_convert_eeg_to_bids_001.png differ diff --git a/dev/_images/sphx_glr_convert_ieeg_to_bids_001.png b/dev/_images/sphx_glr_convert_ieeg_to_bids_001.png index 5720ea1c9..8f2cffe61 100644 Binary files a/dev/_images/sphx_glr_convert_ieeg_to_bids_001.png and b/dev/_images/sphx_glr_convert_ieeg_to_bids_001.png differ diff --git a/dev/_images/sphx_glr_convert_mne_sample_001.png b/dev/_images/sphx_glr_convert_mne_sample_001.png index b0a6f0d89..4157d90a7 100644 Binary files a/dev/_images/sphx_glr_convert_mne_sample_001.png and b/dev/_images/sphx_glr_convert_mne_sample_001.png differ diff --git a/dev/_images/sphx_glr_convert_mri_and_trans_001.png b/dev/_images/sphx_glr_convert_mri_and_trans_001.png index 4831bc9a5..72c9ec4b4 100644 Binary files a/dev/_images/sphx_glr_convert_mri_and_trans_001.png and b/dev/_images/sphx_glr_convert_mri_and_trans_001.png differ diff --git a/dev/_images/sphx_glr_convert_mri_and_trans_002.png b/dev/_images/sphx_glr_convert_mri_and_trans_002.png index 0bfebbab2..c89a1d077 100644 Binary files a/dev/_images/sphx_glr_convert_mri_and_trans_002.png and b/dev/_images/sphx_glr_convert_mri_and_trans_002.png differ diff --git a/dev/_images/sphx_glr_convert_mri_and_trans_003.png b/dev/_images/sphx_glr_convert_mri_and_trans_003.png index 5a524255c..e47670c7a 100644 Binary files a/dev/_images/sphx_glr_convert_mri_and_trans_003.png and b/dev/_images/sphx_glr_convert_mri_and_trans_003.png differ diff --git a/dev/_images/sphx_glr_convert_mri_and_trans_004.png b/dev/_images/sphx_glr_convert_mri_and_trans_004.png index 5a524255c..e47670c7a 100644 Binary files a/dev/_images/sphx_glr_convert_mri_and_trans_004.png and b/dev/_images/sphx_glr_convert_mri_and_trans_004.png differ diff --git a/dev/_images/sphx_glr_convert_nirs_to_bids_001.png b/dev/_images/sphx_glr_convert_nirs_to_bids_001.png index 8115b200b..777f5da3f 100644 Binary files a/dev/_images/sphx_glr_convert_nirs_to_bids_001.png and b/dev/_images/sphx_glr_convert_nirs_to_bids_001.png differ diff --git a/dev/_images/sphx_glr_mark_bad_channels_001.png b/dev/_images/sphx_glr_mark_bad_channels_001.png index 4c434de56..0773745c9 100644 Binary files a/dev/_images/sphx_glr_mark_bad_channels_001.png and b/dev/_images/sphx_glr_mark_bad_channels_001.png differ diff --git a/dev/_images/sphx_glr_mark_bad_channels_002.png b/dev/_images/sphx_glr_mark_bad_channels_002.png index f5a49fcff..f89a21299 100644 Binary files a/dev/_images/sphx_glr_mark_bad_channels_002.png and b/dev/_images/sphx_glr_mark_bad_channels_002.png differ diff --git a/dev/_images/sphx_glr_read_bids_datasets_001.png b/dev/_images/sphx_glr_read_bids_datasets_001.png index 9fdb9940d..8cb176761 100644 Binary files a/dev/_images/sphx_glr_read_bids_datasets_001.png and b/dev/_images/sphx_glr_read_bids_datasets_001.png differ diff --git a/dev/_modules/index.html b/dev/_modules/index.html index 32d9c6336..838b1645b 100644 --- a/dev/_modules/index.html +++ b/dev/_modules/index.html @@ -560,7 +560,7 @@
- © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-16.
+ © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-20.
- © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-16.
+ © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-20.
diff --git a/dev/_modules/mne_bids/dig.html b/dev/_modules/mne_bids/dig.html
index fdc6bde78..520994e6c 100644
--- a/dev/_modules/mne_bids/dig.html
+++ b/dev/_modules/mne_bids/dig.html
@@ -1345,7 +1345,7 @@ Source code for mne_bids.dig
- © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-16.
+ © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-20.
diff --git a/dev/_modules/mne_bids/inspect.html b/dev/_modules/mne_bids/inspect.html
index dc4853f24..9f48be8b4 100644
--- a/dev/_modules/mne_bids/inspect.html
+++ b/dev/_modules/mne_bids/inspect.html
@@ -1008,7 +1008,7 @@ Source code for mne_bids.inspect
- © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-16.
+ © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-20.
diff --git a/dev/_modules/mne_bids/path.html b/dev/_modules/mne_bids/path.html
index 00b8aee07..a374c4b77 100644
--- a/dev/_modules/mne_bids/path.html
+++ b/dev/_modules/mne_bids/path.html
@@ -3054,7 +3054,7 @@ Source code for mne_bids.path
- © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-16.
+ © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-20.
diff --git a/dev/_modules/mne_bids/read.html b/dev/_modules/mne_bids/read.html
index 6153b852d..815cd9e97 100644
--- a/dev/_modules/mne_bids/read.html
+++ b/dev/_modules/mne_bids/read.html
@@ -1707,7 +1707,7 @@ Source code for mne_bids.read
- © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-16.
+ © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-20.
diff --git a/dev/_modules/mne_bids/report/_report.html b/dev/_modules/mne_bids/report/_report.html
index d27710976..9a5f57fdf 100644
--- a/dev/_modules/mne_bids/report/_report.html
+++ b/dev/_modules/mne_bids/report/_report.html
@@ -1091,7 +1091,7 @@ Source code for mne_bids.report._report
- © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-16.
+ © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-20.
diff --git a/dev/_modules/mne_bids/sidecar_updates.html b/dev/_modules/mne_bids/sidecar_updates.html
index f4f50a012..df0a20486 100644
--- a/dev/_modules/mne_bids/sidecar_updates.html
+++ b/dev/_modules/mne_bids/sidecar_updates.html
@@ -942,7 +942,7 @@ Source code for mne_bids.sidecar_updates
- © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-16.
+ © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-20.
diff --git a/dev/_modules/mne_bids/stats.html b/dev/_modules/mne_bids/stats.html
index 1af46beab..a28f046e6 100644
--- a/dev/_modules/mne_bids/stats.html
+++ b/dev/_modules/mne_bids/stats.html
@@ -677,7 +677,7 @@ Source code for mne_bids.stats
- © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-16.
+ © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-20.
diff --git a/dev/_modules/mne_bids/utils.html b/dev/_modules/mne_bids/utils.html
index a63d371df..947d5b5dd 100644
--- a/dev/_modules/mne_bids/utils.html
+++ b/dev/_modules/mne_bids/utils.html
@@ -1094,7 +1094,7 @@ Source code for mne_bids.utils
- © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-16.
+ © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-20.
diff --git a/dev/_modules/mne_bids/write.html b/dev/_modules/mne_bids/write.html
index 27059cf3c..495a37398 100644
--- a/dev/_modules/mne_bids/write.html
+++ b/dev/_modules/mne_bids/write.html
@@ -3702,7 +3702,7 @@ Source code for mne_bids.write
- © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-16.
+ © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-20.
diff --git a/dev/api.html b/dev/api.html
index 9f989c887..8133d682d 100644
--- a/dev/api.html
+++ b/dev/api.html
@@ -770,7 +770,7 @@ mne_bids.copyfiles
- © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-16.
+ © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-20.
diff --git a/dev/authors.html b/dev/authors.html
index 51817298f..40439d27e 100644
--- a/dev/authors.html
+++ b/dev/authors.html
@@ -568,7 +568,7 @@
- © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-16.
+ © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-20.
diff --git a/dev/auto_examples/anonymize_dataset.html b/dev/auto_examples/anonymize_dataset.html
index f2894eb9b..a086e110a 100644
--- a/dev/auto_examples/anonymize_dataset.html
+++ b/dev/auto_examples/anonymize_dataset.html
@@ -672,7 +672,7 @@ Basic anonymizationSpecifying subject IDsSpecifying subject IDsSpecifying subject IDs
@@ -927,9 +927,9 @@ ReproducibilityTotal running time of the script: (0 minutes 12.727 seconds)
+Total running time of the script: (0 minutes 11.064 seconds)
@@ -1091,7 +1091,7 @@ Reproducibility
- © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-16.
+ © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-20.
diff --git a/dev/auto_examples/bidspath.html b/dev/auto_examples/bidspath.html
index ac5009fd2..2137c8736 100644
--- a/dev/auto_examples/bidspath.html
+++ b/dev/auto_examples/bidspath.html
@@ -818,7 +818,7 @@
- © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-16.
+ © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-20.
diff --git a/dev/auto_examples/convert_eeg_to_bids.html b/dev/auto_examples/convert_eeg_to_bids.html
index e75de15c7..450cf6c44 100644
--- a/dev/auto_examples/convert_eeg_to_bids.html
+++ b/dev/auto_examples/convert_eeg_to_bids.html
@@ -597,8 +597,6 @@ Download the dataUsing default location ~/mne_data for EEGBCI...
-Downloading EEGBCI data
-Download complete in 01s (1.2 MB)
[PosixPath('/home/circleci/mne_data/MNE-eegbci-data/files/eegmmidb/1.0.0/S001/S001R02.edf')]
@@ -618,6 +616,13 @@ Download the dataEuropean Data Format with
@@ -680,1048 +685,6 @@ Convert to BIDSUsing default location ~/mne_data for testing...
-Dataset testing version 0.0 out of date, latest version is 0.150
-
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-Download complete in 02m43s (1025.7 MB)
<Figure size 640x640 with 1 Axes>
@@ -2166,7 +1129,7 @@ Cite mne-bidshttps://bids-standard.github.io/bids-validator/
Command line tool: https://www.npmjs.com/package/bids-validator
-Total running time of the script: (2 minutes 45.174 seconds)
+Total running time of the script: (0 minutes 0.592 seconds)
@@ -2255,7 +1218,7 @@ Cite mne-bids
- © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-16.
+ © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-20.
diff --git a/dev/auto_examples/convert_empty_room.html b/dev/auto_examples/convert_empty_room.html
index 4f5ba705b..6fefc2a9a 100644
--- a/dev/auto_examples/convert_empty_room.html
+++ b/dev/auto_examples/convert_empty_room.html
@@ -871,7 +871,7 @@
<Raw | sub-emptyroom_ses-20021204_task-noise_meg.fif, 315 x 66068 (110.0 s), ~354 kB, data not loaded>
-Total running time of the script: (0 minutes 2.185 seconds)
+Total running time of the script: (0 minutes 1.825 seconds)
@@ -943,7 +943,7 @@
- © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-16.
+ © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-20.
diff --git a/dev/auto_examples/convert_group_studies.html b/dev/auto_examples/convert_group_studies.html
index eee4928e3..4876c47a9 100644
--- a/dev/auto_examples/convert_group_studies.html
+++ b/dev/auto_examples/convert_group_studies.html
@@ -599,12 +599,6 @@
data_dir = op.join(mne_data_dir, "MNE-eegbci-data")
-Downloading EEGBCI data
-Download complete in 06s (7.4 MB)
-Downloading EEGBCI data
-Download complete in 06s (7.3 MB)
-
-
Let us loop over the subjects and create BIDS-compatible folder
# Make a path where we can save the data to
bids_root = op.join(mne_data_dir, "eegmmidb_bids_group_conversion")
@@ -959,7 +953,7 @@
0.0 were removed from analysis).
-Total running time of the script: (0 minutes 15.305 seconds)
+Total running time of the script: (0 minutes 2.088 seconds)
@@ -1031,7 +1025,7 @@
- © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-16.
+ © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-20.
diff --git a/dev/auto_examples/convert_ieeg_to_bids.html b/dev/auto_examples/convert_ieeg_to_bids.html
index 03061c3e1..c7166871c 100644
--- a/dev/auto_examples/convert_ieeg_to_bids.html
+++ b/dev/auto_examples/convert_ieeg_to_bids.html
@@ -616,180 +616,6 @@ Step 1: Download the dataUsing default location ~/mne_data for misc...
-Dataset misc version 0.0 out of date, latest version is 0.26
-
-0.00B [00:00, ?B/s]
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Opening raw data file /home/circleci/mne_data/MNE-misc-data/seeg/sample_seeg_ieeg.fif...
Range : 1310640 ... 1370605 = 1311.411 ... 1371.411 secs
Ready.
@@ -1663,7 +1489,7 @@ Step 5: Store coordinates in a template spaceTotal running time of the script: (0 minutes 34.344 seconds)
+Total running time of the script: (0 minutes 5.014 seconds)
@@ -1755,7 +1581,7 @@ Step 5: Store coordinates in a template space
- © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-16.
+ © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-20.
diff --git a/dev/auto_examples/convert_mne_sample.html b/dev/auto_examples/convert_mne_sample.html
index 10e7a72e1..f0ef54f81 100644
--- a/dev/auto_examples/convert_mne_sample.html
+++ b/dev/auto_examples/convert_mne_sample.html
@@ -1131,7 +1131,7 @@
This should be very similar to the ds000248 dataset_description.json!
-Total running time of the script: (0 minutes 3.871 seconds)
+Total running time of the script: (0 minutes 3.578 seconds)
@@ -1203,7 +1203,7 @@
- © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-16.
+ © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-20.
diff --git a/dev/auto_examples/convert_mri_and_trans.html b/dev/auto_examples/convert_mri_and_trans.html
index 254578dc2..61400f9b5 100644
--- a/dev/auto_examples/convert_mri_and_trans.html
+++ b/dev/auto_examples/convert_mri_and_trans.html
@@ -971,7 +971,7 @@ Using manual landmark coordinates in scanner RASWriting '/home/circleci/mne_data/MNE-sample-data-bids/sub-01/ses-01/anat/sub-01_ses-01_FLASH.json'...
-
Total running time of the script: (0 minutes 32.411 seconds)
+Total running time of the script: (0 minutes 28.135 seconds)
@@ -1062,7 +1062,7 @@ Using manual landmark coordinates in scanner RAS
- © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-16.
+ © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-20.
diff --git a/dev/auto_examples/convert_nirs_to_bids.html b/dev/auto_examples/convert_nirs_to_bids.html
index 6813d5c19..1305c368b 100644
--- a/dev/auto_examples/convert_nirs_to_bids.html
+++ b/dev/auto_examples/convert_nirs_to_bids.html
@@ -590,17 +590,6 @@ Download the dataUsing default location ~/mne_data for fnirs_motor_group...
-
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-0.00B [00:00, ?B/s]
-Download complete in 03s (41.7 MB)
|fNIRS-motor-group/
|--- .gitignore
|--- CITATION.cff
@@ -1140,7 +1129,7 @@ Cite mne-bidshttps://bids-standard.github.io/bids-validator/
Command line tool: https://www.npmjs.com/package/bids-validator
-Total running time of the script: (0 minutes 3.902 seconds)
+Total running time of the script: (0 minutes 0.298 seconds)
@@ -1229,7 +1218,7 @@ Cite mne-bids
- © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-16.
+ © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-20.
diff --git a/dev/auto_examples/create_bids_folder.html b/dev/auto_examples/create_bids_folder.html
index dc86d84a1..c9bf7b8b0 100644
--- a/dev/auto_examples/create_bids_folder.html
+++ b/dev/auto_examples/create_bids_folder.html
@@ -692,7 +692,7 @@ Creating folders
- © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-16.
+ © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-20.
diff --git a/dev/auto_examples/mark_bad_channels.html b/dev/auto_examples/mark_bad_channels.html
index d7fd66060..48725a6e9 100644
--- a/dev/auto_examples/mark_bad_channels.html
+++ b/dev/auto_examples/mark_bad_channels.html
@@ -735,7 +735,7 @@ Non-interactive (programmatic) bad channel selection
-Total running time of the script: (0 minutes 11.156 seconds)
+Total running time of the script: (0 minutes 11.143 seconds)
@@ -823,7 +823,7 @@ Non-interactive (programmatic) bad channel selection
- © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-16.
+ © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-20.
diff --git a/dev/auto_examples/read_bids_datasets.html b/dev/auto_examples/read_bids_datasets.html
index 41184d66d..4fde3ff6a 100644
--- a/dev/auto_examples/read_bids_datasets.html
+++ b/dev/auto_examples/read_bids_datasets.html
@@ -615,240 +615,8 @@ Download a subject’s data from an OpenNeuro BIDS datasetUsing default location ~/mne_data for sample...
-Creating ~/mne_data
-Downloading file 'MNE-sample-data-processed.tar.gz' from 'https://osf.io/86qa2/download?version=6' to '/home/circleci/mne_data'.
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-Untarring contents of '/home/circleci/mne_data/MNE-sample-data-processed.tar.gz' to '/home/circleci/mne_data'
Attempting to create new mne-python configuration file:
/home/circleci/.mne/mne-python.json
-Download complete in 41s (1576.2 MB)
👋 Hello! This is openneuro-py 2023.1.0. Great to see you! 🤗
@@ -858,100 +626,71 @@ Download a subject’s data from an OpenNeuro BIDS datasetTotal running time of the script: (0 minutes 48.758 seconds)
+Total running time of the script: (0 minutes 5.207 seconds)
@@ -1277,7 +1016,7 @@ Read the data
- © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-16.
+ © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-20.
diff --git a/dev/auto_examples/rename_brainvision_files.html b/dev/auto_examples/rename_brainvision_files.html
index ce5aaa04d..bad9f7c16 100644
--- a/dev/auto_examples/rename_brainvision_files.html
+++ b/dev/auto_examples/rename_brainvision_files.html
@@ -652,7 +652,7 @@ Referenceshttps://doi.org/10.1038/s41597-019-0104-8
-
Total running time of the script: (0 minutes 0.017 seconds)
+Total running time of the script: (0 minutes 0.015 seconds)
@@ -742,7 +742,7 @@ References
- © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-16.
+ © Copyright 2017-2023, MNE Developers. Last updated on 2023-11-20.
diff --git a/dev/auto_examples/sg_execution_times.html b/dev/auto_examples/sg_execution_times.html
index 896785c22..9ccdfbbea 100644
--- a/dev/auto_examples/sg_execution_times.html
+++ b/dev/auto_examples/sg_execution_times.html
@@ -512,55 +512,55 @@
Computation times#
-05:45.575 total execution time for auto_examples files:
+01:09.059 total execution time for auto_examples files: