From e5391d78be37426586fab9343ce8c6c15b4604d3 Mon Sep 17 00:00:00 2001
From: cristianetaniguti <chaytaniguti@gmail.com>
Date: Mon, 27 Nov 2023 11:42:27 -0600
Subject: [PATCH] checked and tested

---
 man/edit_order.Rd          | 6 +++++-
 man/merge_parental_maps.Rd | 3 ++-
 2 files changed, 7 insertions(+), 2 deletions(-)

diff --git a/man/edit_order.Rd b/man/edit_order.Rd
index 8115528c..0646aa9a 100644
--- a/man/edit_order.Rd
+++ b/man/edit_order.Rd
@@ -5,10 +5,14 @@
 \title{Edit sequence ordered by reference genome positions
 comparing to another set order}
 \usage{
-edit_order(input.seq)
+edit_order(input.seq, invert = NULL, remove = NULL)
 }
 \arguments{
 \item{input.seq}{object of class mappoly.sequence with alternative order (not genomic order)}
+
+\item{invert}{vector of marker names to be inverted}
+
+\item{remove}{vector of marker names to be removed}
 }
 \value{
 object of class \code{mappoly.edit.order}: a list containing
diff --git a/man/merge_parental_maps.Rd b/man/merge_parental_maps.Rd
index 3debc8f6..7d0ed3e6 100644
--- a/man/merge_parental_maps.Rd
+++ b/man/merge_parental_maps.Rd
@@ -9,7 +9,8 @@ merge_parental_maps(
   map.p2,
   full.seq,
   full.mat,
-  method = c("ols", "hmm")
+  method = c("ols", "hmm"),
+  verbose = TRUE
 )
 }
 \arguments{