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[FEATURE] Extend the files supported for ingestion #930

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sarthakpati opened this issue Sep 9, 2024 · 0 comments
Open

[FEATURE] Extend the files supported for ingestion #930

sarthakpati opened this issue Sep 9, 2024 · 0 comments
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enhancement New feature or request

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@sarthakpati
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sarthakpati commented Sep 9, 2024

Is your feature request related to a problem? Please describe.

The following new file types need to be supported:

  1. Radiology: 3D DICOM tomosynthesis to standards-compliant NIfTI images (as a likely extension to the GaNDLF's anonymization submodule): example images, example code (this is a private repo - request access)
  2. Histology:
    a. Philips isyntax: example image, example code 1, 2
    b. DICOM: example image (download using this script), example code
    c. DSA annotations to PNG: take annotations generated using DSA along with the input WSI, and save the associated image patches and annotations; example data, example code (both need authorization)

Describe the solution you'd like

This will probably needs to be done over multiple PRs.

Describe alternatives you've considered

N.A.

Additional context

N.A.

@sarthakpati sarthakpati added the enhancement New feature or request label Sep 9, 2024
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