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Dockerized Jupyter

Dockerized Jupyter

This repository provides a docker-compose.yml file, based on the jupyter/minimal-notebook image, which is a minimal Jupyter notebook server. With Docker, you can easily set up a Jupyter Notebook environment without worrying about dependencies or affecting your local machine. The environment is self-contained and can be easily destroyed when you're done. It comes with an installed conda environment and you can install additional packages as needed, creating new environments for different projects. Additionally, the container is configured to automatically save your notebooks to a directory on your local machine, allowing for easy access outside of the container. All the Conda environments are also saved locally, making it easy to restore them if anything happens to the container. This repository is a great starting point for anyone looking to explore Jupyter and Docker.

Pre-requisites

  • Docker: Make sure you have Docker installed on your machine. Download and install guide can be found here.
  • Docker Compose: Make sure Docker Compose is also installed on your local machine. Docker Compose is included with Docker Desktop for Windows and macOS, but Linux users may need to install it separately. You can download Docker Compose from the official website.

Installation

  1. Clone this repository to your local machine:

    git clone https://github.com/mirsazzathossain/dockerized-jupyter.git
# or
git clone [email protected]:mirsazzathossain/dockerized-jupyter.git

  2. Change directory to the cloned repository:

     cd dockerized-jupyter

  3. Create a .env file for environment variables:

    touch .env

  4. Add the following environment variables to the .env file:

    JUPYTER_TOKEN=your-jupyter-token
PASSWORD_HASH=your-password-hash
NOTEBOOK_USER=your-notebook-user

    Set a random string for JUPYTER_TOKEN which will be used to access the Jupyter Notebook server. You can generate a PASSWORD_HASH using the following command:

    python -c "from notebook.auth import passwd; print(passwd(passphrase='your-password', algorithm='sha1'))"

    This will generate a PASSWORD_HASH for the password your-password. When you run the command, you will see an output similar to the following:

    sha1:your-password-hash

    Copy the PASSWORD_HASH and paste it in the .env file. Set a username for NOTEBOOK_USER which will be used as the username in the Jupyter Notebook server.

  5. Build the Docker container:

    docker compose up -d

  6. Navigate to http://localhost:8888 or https://<your-public-ip>:8888 in your browser. You will be prompted to enter the JUPYTER_TOKEN you set in the .env file. Once you enter the token, you will be able to access the Jupyter Notebook server.

Modifying the Configuration

If you need to modify the configuration of the Docker container, you can do so by editing the docker-compose.yml file. However, keep in mind that any changes you make to this file will not take effect until you restart the Docker container.

Using conda in Jupyter Lab

You can create a new conda environment using the following command in the Jupyter Notebook terminal:

conda create --name myenv python=3.x

You can activate the environment using the following command:

conda activate myenv

To install packages in the environment, use the following command:

conda install -c conda-forge <package-name>

To deactivate the environment, use the following command:

conda deactivate

Using conda environments as kernels in Jupyter

You can use the conda environments as kernels in Jupyter. To do so, first activate the environment you want to use as a kernel. Then, run the following command to install ipykernel:

conda install -c anaconda ipykernel

Once the installation is complete, run the following command to register the environment as a kernel:

python -m ipykernel install --user --name myenv --display-name "Python (myenv)"

Restart the Jupyter Notebook kernel and you will see the new kernel in the kernel list. You can now use the environment as a kernel in Jupyter.

Saving and restoring conda environments

You can save the conda environment to a file using the following command:

conda env export > environments/myenv.yml

If any thigs happen to the container, the conda environments will be saved in the environments directory on your local machine. Once you have the container up and running again, all the environments will be restored automatically.

Contributing

If you have any suggestions or improvements, feel free to open an issue or submit a pull request. If you find this repository useful, please consider giving it a star.

License

This project is licensed under the MIT License - see the LICENSE file for details. Feel free to use this code in your projects, but please don't copy-paste it. Try to understand what it does and write it yourself. This will help you learn and understand the code better. You can read my blog post titled "Dockerize Your Data Science Workflow: A Step-by-Step Guide to Setting Up Jupyter Lab on Your Private Linux Machine" for more details. If you do use it, a mention would be appreciated, but is not required. Thanks! ❤️ ↩