From aa51f1e5d2021ec1bc89388efdefa5849d8473e0 Mon Sep 17 00:00:00 2001 From: Samadhan Khatal Date: Mon, 9 Dec 2024 10:43:15 +0530 Subject: [PATCH] Drug comb leaderboard submission --- benchmark/leaderboards.py | 62 +++++++++++++++++++++++++++++++++++++++ 1 file changed, 62 insertions(+) diff --git a/benchmark/leaderboards.py b/benchmark/leaderboards.py index 3ec38d4..1b9fe07 100644 --- a/benchmark/leaderboards.py +++ b/benchmark/leaderboards.py @@ -2394,11 +2394,27 @@ "MLP", "Yusuf Roohani", "yroohani@stanford.edu", "https://github.com/mims-harvard/TDC/tree/master/examples/multi_pred/drugcombo", "https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2509-3", "7,141,297", 4.453 ], + [ + 'Innoplexus DC GNN', 'Ketan Sarode', 'ketan.sarode@ics.innoplexus.com', 'https://github.com/Innoplexus-opensource/ics-drug-combination-tdc/tree/main', + 'https://github.com/Innoplexus-opensource/ics-drug-combination-tdc/blob/main/report/main.pdf', '17,533,553', 4.422 + ], + [ + 'Innoplexus DC LM', 'Ketan Sarode', 'ketan.sarode@ics.innoplexus.com', 'https://github.com/Innoplexus-opensource/ics-drug-combination-tdc/tree/main', + 'https://github.com/Innoplexus-opensource/ics-drug-combination-tdc/blob/main/report/main.pdf', '17,566,801', 4.108 + ], ], [ [ 4.453, 0.002 + ], + [ + 4.422, + 0.051 + ], + [ + 4.108, + 0.013 ] ], ["Label", "Size", "Task", "Metric", "Dataset Split"], @@ -2413,12 +2429,26 @@ "MLP", "Yusuf Roohani", "yroohani@stanford.edu", "https://github.com/mims-harvard/TDC/tree/master/examples/multi_pred/drugcombo", "https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2509-3", "7,141,297", 9.184 ], + ['Innoplexus DC GNN', 'Ketan Sarode', 'ketan.sarode@ics.innoplexus.com', 'https://github.com/Innoplexus-opensource/ics-drug-combination-tdc/tree/main', + 'https://github.com/Innoplexus-opensource/ics-drug-combination-tdc/blob/main/report/main.pdf', '17,533,553', 8.437 + ], + ['Innoplexus DC LM', 'Ketan Sarode', 'ketan.sarode@ics.innoplexus.com', 'https://github.com/Innoplexus-opensource/ics-drug-combination-tdc/tree/main', + 'https://github.com/Innoplexus-opensource/ics-drug-combination-tdc/blob/main/report/main.pdf', '17,566,801', 7.94 + ], ], [ [ 9.184, 0.001 ], + [ + 8.437, + 0.125 + ], + [ + 7.94, + 0.023 + ] ], ["Label", "Size", "Task", "Metric", "Dataset Split"], ["TDC.DrugComb_Loewe", "297,098", "Regression", "MAE", "Combination"], @@ -2432,12 +2462,28 @@ "MLP", "Yusuf Roohani", "yroohani@stanford","https://github.com/mims-harvard/TDC/tree/master/examples/multi_pred/drugcombo", "https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2509-3", "7,141,297", 4.560 ], + [ + 'Innoplexus DC GNN', 'Ketan Sarode', 'ketan.sarode@ics.innoplexus.com', 'https://github.com/Innoplexus-opensource/ics-drug-combination-tdc/tree/main', + 'https://github.com/Innoplexus-opensource/ics-drug-combination-tdc/blob/main/report/main.pdf', '17,533,553', 4.533 + ], + [ + 'Innoplexus DC LM', 'Ketan Sarode', 'ketan.sarode@ics.innoplexus.com', 'https://github.com/Innoplexus-opensource/ics-drug-combination-tdc/tree/main', + 'https://github.com/Innoplexus-opensource/ics-drug-combination-tdc/blob/main/report/main.pdf', '17,566,801', 4.256 + ], ], [ [ 4.560, 0.000 ], + [ + 4.533, + 0.036 + ], + [ + 4.256, + 0.01 + ] ], ["Label", "Size", "Task", "Metric", "Dataset Split"], ["TDC.DrugComb_Bliss", "297,098", "Regression", "MAE", "Combination"], @@ -2451,12 +2497,28 @@ "MLP", "Yusuf Roohani", "yroohani@stanford","https://github.com/mims-harvard/TDC/tree/master/examples/multi_pred/drugcombo", "https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2509-3", "7,141,297", 4.027 ], + [ + 'Innoplexus DC GNN', 'Ketan Sarode', 'ketan.sarode@ics.innoplexus.com', 'https://github.com/Innoplexus-opensource/ics-drug-combination-tdc/tree/main', + 'https://github.com/Innoplexus-opensource/ics-drug-combination-tdc/blob/main/report/main.pdf', '17,533,553', 3.799 + ], + [ + 'Innoplexus DC LM', 'Ketan Sarode', 'ketan.sarode@ics.innoplexus.com', 'https://github.com/Innoplexus-opensource/ics-drug-combination-tdc/tree/main', + 'https://github.com/Innoplexus-opensource/ics-drug-combination-tdc/blob/main/report/main.pdf', '17,566,801', 3.673 + ], ], [ [ 4.027, 0.003 ], + [ + 3.799, + 0.038 + ], + [ + 3.673, + 0.019 + ] ], ["Label", "Size", "Task", "Metric", "Dataset Split"], ["TDC.DrugComb_ZIP", "297,098", "Regression", "MAE", "Combination"],