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simple questions #16

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woodoo46 opened this issue Mar 21, 2018 · 0 comments
Open

simple questions #16

woodoo46 opened this issue Mar 21, 2018 · 0 comments

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@woodoo46
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woodoo46 commented Mar 21, 2018

Hi there,

I have some simple qquestions:

  1. For ID column in the vcf file, does it mean something? For example,
    1;1026680;1026780;Y;13248902;13249002;C
  2. At the same position, different alleles are called? for example, I saw
    1 1026680 1;1026680;1026780;Y;13248902;13249002;C C DEL
    1 1026680 1;1026680;1026780;Y;13248902;13249002;S C DUP
  3. Some insertions are represented as translocation?
    1 18376048 1;18376049;18376162;20;32043723;32043823;C G G[20:32043723[ 13533.7018526 PASS SVTYPE=TRA GT 0|1
    1 18376049 1;18376049;18376162;20;32043723;32043823;C T ]20:32043822]T 13533.7018526 PASS SVTYPE=TRA GT 0|1

Thanks.

George

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