diff --git a/csharp/test/Microsoft.ML.OnnxRuntime.EndToEndTests/runtest.bat b/csharp/test/Microsoft.ML.OnnxRuntime.EndToEndTests/runtest.bat
index 07128fe1620ab..c16f12dc17f79 100755
--- a/csharp/test/Microsoft.ML.OnnxRuntime.EndToEndTests/runtest.bat
+++ b/csharp/test/Microsoft.ML.OnnxRuntime.EndToEndTests/runtest.bat
@@ -52,9 +52,12 @@ IF NOT errorlevel 0 (
 %dn% list test\Microsoft.ML.OnnxRuntime.EndToEndTests\Microsoft.ML.OnnxRuntime.EndToEndTests.csproj package
 dir test\Microsoft.ML.OnnxRuntime.EndToEndTests\packages\
 
-IF "%PACKAGENAME%"=="Microsoft.ML.OnnxRuntime.Gpu" (
+set gpu_package=F
+IF "%PACKAGENAME%"=="Microsoft.ML.OnnxRuntime.Gpu" set gpu_package=T
+IF "%PACKAGENAME%"=="Microsoft.ML.OnnxRuntime.Gpu.Windows" set gpu_package=T
+IF %%gpu_package%%=="T" (
   set TESTONGPU=ON
-  %dn% test -p:DefineConstants=USE_TENSORRT test\Microsoft.ML.OnnxRuntime.EndToEndTests\Microsoft.ML.OnnxRuntime.EndToEndTests.csproj --no-restore --filter TensorRT 
+  %dn% test -p:DefineConstants=USE_TENSORRT test\Microsoft.ML.OnnxRuntime.EndToEndTests\Microsoft.ML.OnnxRuntime.EndToEndTests.csproj --no-restore --filter TensorRT
 
   IF NOT errorlevel 0 (
     @echo "Failed to build or execute the end-to-end test"
diff --git a/csharp/test/Microsoft.ML.OnnxRuntime.EndToEndTests/runtest.sh b/csharp/test/Microsoft.ML.OnnxRuntime.EndToEndTests/runtest.sh
index 39f0ff1c2f85e..a500e4bce8fbf 100755
--- a/csharp/test/Microsoft.ML.OnnxRuntime.EndToEndTests/runtest.sh
+++ b/csharp/test/Microsoft.ML.OnnxRuntime.EndToEndTests/runtest.sh
@@ -32,7 +32,7 @@ if [ $RunTestCsharp = "true" ]; then
     exit 1
   fi
 
-  if [ $PACKAGENAME = "Microsoft.ML.OnnxRuntime.Gpu" ]; then
+  if [ $PACKAGENAME = "Microsoft.ML.OnnxRuntime.Gpu" ] || [ $PACKAGENAME = "Microsoft.ML.OnnxRuntime.Gpu.Linux" ]; then
     export TESTONGPU=ON
     dotnet test -p:DefineConstants=USE_CUDA $BUILD_SOURCESDIRECTORY/csharp/test/Microsoft.ML.OnnxRuntime.EndToEndTests/Microsoft.ML.OnnxRuntime.EndToEndTests.csproj --no-restore --verbosity detailed
     if [ $? -ne 0 ]; then