.gitignore

*.pyc
*~
*.o
*.a
lobSTR
lobSTRIndex
allelotype
lobSTRTests
test.genotypes.tab
test.vcf
autom4te.cache/*
Makefile
config.h
stamp-h1
config.log
config.status
src/.deps
test.aligned.tab
test.aligned.bam
test.vcf
test.aligned.stats
test.allelotype.stats
test.post
data/strinfo.hg19_1to6.tab
test_data/*

Makefile.in
aclocal.m4
config.h.in
config/ar-lib
config/test-driver
configure
m4/Makefile.in
src/Makefile.in
src/api/.deps/
src/api/.dirstamp
src/api/internal/.deps/
src/api/internal/.dirstamp
src/tests/.deps/
src/tests/.dirstamp
src/utils/.deps/
src/utils/.dirstamp

# Test output files.
src/lobSTRTests.log
src/lobSTRTests.trs
src/test-suite.log

# Tarballs
lobSTR-*.tar.bz2
lobSTR-*.tar.gz

# Auto-generate files
.version
config/config.guess
config/config.sub
config/depcomp
config/install-sh
config/missing

# libtool autogenerated files
config/ltmain.sh
libtool
m4/libtool.m4
m4/ltoptions.m4
m4/ltsugar.m4
m4/ltversion.m4
m4/lt~obsolete.m4

#Coverage files
src/*.gcda
src/*.gcno
src/*.gcov
src/api/*.gcda
src/api/*.gcno
src/api/*.gcov
src/api/internal/*.gcda
src/api/internal/*.gcno
src/api/internal/*.gcov
src/tests/*.gcda
src/tests/*.gcno
src/tests/*.gcov
src/utils/*.gcda
src/utils/*.gcno
src/utils/*.gcov
lobstr.lcov
lobstr-cov/*

# Jekyll files
Gemfile.lock
_site/*

# Special readmes for specific setups
readme_broad.txt