From f2b140bcf51ad204011a58f58e2ad5990d258f55 Mon Sep 17 00:00:00 2001 From: mfisher5 Date: Sun, 1 Nov 2020 20:09:35 -0800 Subject: [PATCH] minor readme edits --- .gitignore | 2 +- README.md | 2 +- scripts/README.md | 4 +++- 3 files changed, 5 insertions(+), 3 deletions(-) diff --git a/.gitignore b/.gitignore index f848355..710d48c 100644 --- a/.gitignore +++ b/.gitignore @@ -16,4 +16,4 @@ results/figures/fig1/*.png results/figures/fig1/*.ppt results/figures/fig1/*.pptx results/figures/fig1/*.pdf -scripts/00_calculate_vessel_lengths.Rmd \ No newline at end of file +results/figures/TableS* \ No newline at end of file diff --git a/README.md b/README.md index b04e969..3173a1b 100644 --- a/README.md +++ b/README.md @@ -61,7 +61,7 @@ To rerun the entire analysis, use the ordered .Rmd scripts in the **scripts** fo 1. Fork and clone the repository. 2. Copy raw fish ticket and vessel registration data downloaded from PacFIN into the **data/raw** directory. This folder is already included in the `.gitignore` file. 3. Run the scripts in order (details provided in the **scripts** directory README). We suggest that you check and update the `.gitignore` file after every script, to avoid accidentally publishing data containing confidential information. -4. Use the scripts in the **scripts/figures** folder to recreate the figures in Fisher et al. (in revision). +4. Use the scripts in the **scripts/figures** folder to recreate the figures and tables in Fisher et al. (in revision).
diff --git a/scripts/README.md b/scripts/README.md index 7dc6099..b870f2a 100644 --- a/scripts/README.md +++ b/scripts/README.md @@ -1,6 +1,6 @@ ## Scripts -Conduct the network analyses from Fisher et al. (in prep) using these RMarkdown scripts. They are ordered by step in the analysis, and will source functions from the `R` directory. Landings data are organized by fish ticket, and metiers identified within each port group. Where possible, `.html` files are provided as examples. +Conduct the network analyses from Fisher et al. (in revision) using these RMarkdown scripts. They are ordered by step in the analysis, and will source functions from the `R` directory. Landings data are organized by fish ticket, and metiers identified within each port group. Where possible, `.html` files are provided as examples. (0. process the raw landings data from PacFIN) @@ -28,3 +28,5 @@ Conduct the network analyses from Fisher et al. (in prep) using these RMarkdown Scripts in the **Figures** folder produce the figures used in the main text or the supplement. + +*Note that the code for the directed networks is specifically constructed to understand vessel participation and spillover centered around the Dungeness crab fishery. If you wish to apply this analysis to a different event / fishery, please contact the authors first!*