From f59bc3ba09afada0f79375aaf76be3c03dc1194f Mon Sep 17 00:00:00 2001
From: Davide Albanese <davide.albanese@gmail.com>
Date: Fri, 18 Jun 2021 13:23:23 +0200
Subject: [PATCH] redirect kraken output to /dev/null

---
 modules/kraken.nf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/modules/kraken.nf b/modules/kraken.nf
index cd30d5d..382f58f 100644
--- a/modules/kraken.nf
+++ b/modules/kraken.nf
@@ -23,7 +23,7 @@ process kraken2 {
         --threads ${task.cpus} \
         $report_zero_counts \
         --report ${id}.kraken2.report \
-        $input
+        $input > /dev/null
 
     kreport2mpa.py -r ${id}.kraken2.report -o ${id}.kraken2.mpa
     """