diff --git a/meteor/meteor.py b/meteor/meteor.py index f24e1bb..ce650d3 100644 --- a/meteor/meteor.py +++ b/meteor/meteor.py @@ -572,7 +572,7 @@ def get_arguments() -> Namespace: # pragma: no cover dest="ploidy", default=Strain.DEFAULT_PLOIDY, type=int, - help="Ploidy (default: >= %(default).1f).", + help="Ploidy (default: %(default)d).", ) strain_parser.add_argument( "-m", @@ -840,10 +840,14 @@ def main() -> None: # pragma: no cover fastq_importer.execute() meteor.fastq_dir = Path(tmpdirname) / "test" meteor.ref_dir = meteor.ref_dir / "mock" - counter = Counter(meteor, "total", "end-to-end", 80, 0.97, 100, 10, False, True) + counter = Counter( + meteor, "total", "end-to-end", 80, 0.97, 100, 10, False, True + ) counter.execute() meteor.fastq_dir = Path(tmpdirname) / "test2" - counter = Counter(meteor, "total", "end-to-end", 80, 0.97, 100, 10, False, True) + counter = Counter( + meteor, "total", "end-to-end", 80, 0.97, 100, 10, False, True + ) counter.execute() meteor.mapped_sample_dir = meteor.mapping_dir / "test" print(meteor.mapped_sample_dir)