diff --git a/poetry.lock b/poetry.lock
index 7ae25ef..3f14705 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -16,13 +16,13 @@ packaging = "*"
 
 [[package]]
 name = "astroid"
-version = "3.1.0"
+version = "3.3.5"
 description = "An abstract syntax tree for Python with inference support."
 optional = false
-python-versions = ">=3.8.0"
+python-versions = ">=3.9.0"
 files = [
-    {file = "astroid-3.1.0-py3-none-any.whl", hash = "sha256:951798f922990137ac090c53af473db7ab4e70c770e6d7fae0cec59f74411819"},
-    {file = "astroid-3.1.0.tar.gz", hash = "sha256:ac248253bfa4bd924a0de213707e7ebeeb3138abeb48d798784ead1e56d419d4"},
+    {file = "astroid-3.3.5-py3-none-any.whl", hash = "sha256:a9d1c946ada25098d790e079ba2a1b112157278f3fb7e718ae6a9252f5835dc8"},
+    {file = "astroid-3.3.5.tar.gz", hash = "sha256:5cfc40ae9f68311075d27ef68a4841bdc5cc7f6cf86671b49f00607d30188e2d"},
 ]
 
 [package.dependencies]
@@ -40,30 +40,12 @@ files = [
 
 [[package]]
 name = "biom-format"
-version = "2.1.15"
+version = "2.1.16"
 description = "Biological Observation Matrix (BIOM) format"
 optional = false
 python-versions = ">=3.6"
 files = [
-    {file = "biom-format-2.1.15.tar.gz", hash = "sha256:3bda2096e663dc1cb6f90f51b394da0838b9be5164a44370c134ce5b3b2a4dd3"},
-    {file = "biom_format-2.1.15-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:f4362ea4ee924eb9a28555463cc921d70f851359ca4470ad211d608b05c908c0"},
-    {file = "biom_format-2.1.15-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:bcbc25a118b250d71706e4a91b7bd75cb55360e94aa6483bdeac0a16eebc0326"},
-    {file = "biom_format-2.1.15-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:5e06c35673f869180be68559e8bad1dfc381ce1ff274f028f88bfba55b2a5605"},
-    {file = "biom_format-2.1.15-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:0f2f6f55d0b1372955273daa4273fc453a8bdc309e353c6e7bcb83387d2dacf0"},
-    {file = "biom_format-2.1.15-cp311-cp311-macosx_10_9_universal2.whl", hash = "sha256:cdb34b74485950f19eed3e79ac7c76aa86ad4aedcf9074cf208b91b6ce05d04e"},
-    {file = "biom_format-2.1.15-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:36ac032ca0e8049613c7207b46408324978d161216e073730299748cd8cb3e4f"},
-    {file = "biom_format-2.1.15-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:15c7951559c8c63e07af53c8ad1d57625dae92c026a904a8d33c08d16df6551a"},
-    {file = "biom_format-2.1.15-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:827592630fca0c5dfc06e015551863c09c1685e4659a6a1121b99a8bfdee76ca"},
-    {file = "biom_format-2.1.15-cp37-cp37m-macosx_10_9_x86_64.whl", hash = "sha256:c735a93b21eb804fdf8f8fdc4b4cdce1ac347ec19e19e5a3bafe79e22e703710"},
-    {file = "biom_format-2.1.15-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:4da299473b6d4dc674f3e646747bd16d5c482d4b34c6b62e416b93890ad1748e"},
-    {file = "biom_format-2.1.15-cp38-cp38-macosx_10_9_universal2.whl", hash = "sha256:75213db5ae27172c940867c39dca45c4a39fb79e488846c4225d14623ee40b3c"},
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-    {file = "biom_format-2.1.15-cp38-cp38-macosx_11_0_arm64.whl", hash = "sha256:02a52c9b7ebe8206a229436f0478259cf94be154c2cb93e562ef3c9ef541c02a"},
-    {file = "biom_format-2.1.15-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:bb8c8636136c8e68c309cedd339aff0bf0b9eb593c6228070074b89b0a2feeb3"},
-    {file = "biom_format-2.1.15-cp39-cp39-macosx_10_9_universal2.whl", hash = "sha256:ab88f835e380ab1cb5316bf72c1c446445ae7306c429d2c7b9e015147eb37af2"},
-    {file = "biom_format-2.1.15-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:300b0e5e1a5444702a39b60deeb662e9e44a1d49669435e9d1d75c5f69f2d9dc"},
-    {file = "biom_format-2.1.15-cp39-cp39-macosx_11_0_arm64.whl", hash = "sha256:1ae562951fb791406186b85b42de2e83030df96f2fa8455be6393694cae8c250"},
-    {file = "biom_format-2.1.15-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:3aa462f10c2a3335c41fd4fee2fff16a4663316ad2f9c8a0877f1bb693a3d28e"},
+    {file = "biom-format-2.1.16.tar.gz", hash = "sha256:47f88d57a94ecaa4d06f3578ca394e78db6d12e46ab0886634743181e67dcfc9"},
 ]
 
 [package.dependencies]
@@ -148,25 +130,37 @@ files = [
 [package.dependencies]
 colorama = {version = "*", markers = "platform_system == \"Windows\""}
 
+[[package]]
+name = "cloudpickle"
+version = "3.1.0"
+description = "Pickler class to extend the standard pickle.Pickler functionality"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "cloudpickle-3.1.0-py3-none-any.whl", hash = "sha256:fe11acda67f61aaaec473e3afe030feb131d78a43461b718185363384f1ba12e"},
+    {file = "cloudpickle-3.1.0.tar.gz", hash = "sha256:81a929b6e3c7335c863c771d673d105f02efdb89dfaba0c90495d1c64796601b"},
+]
+
 [[package]]
 name = "cogent3"
-version = "2024.5.7a1"
+version = "2024.7.19a9"
 description = "COmparative GENomics Toolkit 3: genomic sequence analysis within notebooks or on compute systems with 1000s of CPUs."
 optional = false
 python-versions = "<3.13,>=3.9"
 files = [
-    {file = "cogent3-2024.5.7a1-py3-none-any.whl", hash = "sha256:c40b0929ae934add5ec9eb3e23bbfefe4d7185af1d607738b16e4c3bd8bf07da"},
-    {file = "cogent3-2024.5.7a1.tar.gz", hash = "sha256:7e4417a2728d246b1acc695209ec2e4f24ab9c7bfcd01cd113db0a791ea1c090"},
+    {file = "cogent3-2024.7.19a9-py3-none-any.whl", hash = "sha256:3a52e17f47ad8bf0b3d396ddfa4f5878061afb86e766b49a0eedb7e510985511"},
+    {file = "cogent3-2024.7.19a9.tar.gz", hash = "sha256:5f1ab042294f718a77e0d8fa8adf3b20fefe9ef5a47b1c2092e50e8560883afa"},
 ]
 
 [package.dependencies]
 chardet = "*"
+loky = "*"
 numba = [
     {version = ">0.54", markers = "python_version >= \"3.10\" and python_version < \"3.12\" and python_version != \"3.11\""},
     {version = ">=0.59.0", markers = "python_version == \"3.12\""},
     {version = ">=0.57.0", markers = "python_version == \"3.11\""},
 ]
-numpy = "<2"
+numpy = "*"
 scipy = "*"
 scitrack = "*"
 stevedore = "*"
@@ -174,10 +168,10 @@ tqdm = "*"
 typing_extensions = "*"
 
 [package.extras]
-dev = ["black (==24.4.2)", "click (==8.1.7)", "flit", "ipykernel", "ipython", "ipywidgets", "isort (==5.13.2)", "jupyter-sphinx", "jupyter_client", "jupyterlab", "jupytext", "kaleido", "matplotlib", "nbconvert (>5.4)", "nbformat", "nbsphinx", "nox", "numpydoc", "pandas", "pillow", "plotly", "psutil", "pydata_sphinx_theme", "pytest", "pytest-cov", "pytest-xdist", "scriv", "sphinx", "sphinx-autobuild", "sphinx_design", "sphinxcontrib-bibtex", "sphinxcontrib-video", "tinydb"]
-doc = ["click (==8.1.7)", "ipykernel", "ipython", "ipywidgets", "jupyter-sphinx", "jupyter_client", "jupyterlab", "jupytext", "kaleido", "matplotlib", "nbconvert (>5.4)", "nbformat", "nbsphinx", "numpydoc", "pandas", "pillow", "plotly", "psutil", "pydata_sphinx_theme", "sphinx", "sphinx-autobuild", "sphinx_design", "sphinxcontrib-bibtex", "sphinxcontrib-video"]
+dev = ["flit", "ipykernel", "ipython", "ipywidgets", "jupyter-sphinx", "jupyter_client", "jupyterlab", "jupytext", "kaleido", "nbconvert (>5.4)", "nbformat", "nbsphinx", "nox", "numpydoc", "pandas", "pillow", "plotly", "psutil", "pydata_sphinx_theme", "pytest", "pytest-cov", "pytest-xdist", "ruff (==0.6.7)", "scriv", "sphinx", "sphinx-autobuild", "sphinx_design", "sphinxcontrib-bibtex", "sphinxcontrib-video", "tinydb"]
+doc = ["click", "ipykernel", "ipython", "ipywidgets", "jupyter-sphinx", "jupyter_client", "jupyterlab", "jupytext", "kaleido", "nbconvert (>5.4)", "nbformat", "nbsphinx", "numpydoc", "pandas", "pillow", "plotly", "psutil", "pydata_sphinx_theme", "sphinx", "sphinx-autobuild", "sphinx_design", "sphinxcontrib-bibtex", "sphinxcontrib-video"]
 extra = ["kaleido", "pandas", "plotly", "psutil"]
-test = ["black (==24.4.2)", "click (==8.1.7)", "isort (==5.13.2)", "kaleido", "nox", "pandas", "plotly", "psutil", "pytest", "pytest-cov", "pytest-xdist", "tinydb"]
+test = ["kaleido", "nox", "pandas", "plotly", "psutil", "pytest", "pytest-cov", "pytest-xdist", "ruff (==0.6.7)", "tinydb"]
 
 [[package]]
 name = "colorama"
@@ -192,63 +186,73 @@ files = [
 
 [[package]]
 name = "coverage"
-version = "7.4.3"
+version = "7.6.7"
 description = "Code coverage measurement for Python"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 files = [
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 name = "iniconfig"
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+[[package]]
+name = "loky"
+version = "3.4.1"
+description = "A robust implementation of concurrent.futures.ProcessPoolExecutor"
+optional = false
+python-versions = ">=3.7"
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+
+[package.dependencies]
+cloudpickle = "*"
+
 [[package]]
 name = "mccabe"
 version = "0.7.0"
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 [package.extras]
 dmypy = ["psutil (>=4.0)"]
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 install-types = ["pip"]
 mypyc = ["setuptools (>=50)"]
 reports = ["lxml"]
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 ]
 
 [package.dependencies]
-llvmlite = "==0.42.*"
-numpy = ">=1.22,<1.27"
+llvmlite = "==0.43.*"
+numpy = ">=1.22,<2.1"
 
 [[package]]
 name = "numpy"
@@ -549,47 +574,60 @@ files = [
 
 [[package]]
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+version = "2.2.3"
 description = "Powerful data structures for data analysis, time series, and statistics"
 optional = false
 python-versions = ">=3.9"
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 ]
 
 [package.dependencies]
 numpy = [
-    {version = ">=1.22.4,<2", markers = "python_version < \"3.11\""},
-    {version = ">=1.26.0,<2", markers = "python_version >= \"3.12\""},
-    {version = ">=1.23.2,<2", markers = "python_version == \"3.11\""},
+    {version = ">=1.22.4", markers = "python_version < \"3.11\""},
+    {version = ">=1.26.0", markers = "python_version >= \"3.12\""},
+    {version = ">=1.23.2", markers = "python_version == \"3.11\""},
 ]
 python-dateutil = ">=2.8.2"
 pytz = ">=2020.1"
@@ -622,17 +660,17 @@ xml = ["lxml (>=4.9.2)"]
 
 [[package]]
 name = "pandas-stubs"
-version = "2.2.0.240218"
+version = "2.2.3.241009"
 description = "Type annotations for pandas"
 optional = false
-python-versions = ">=3.9"
+python-versions = ">=3.10"
 files = [
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 ]
 
 [package.dependencies]
-numpy = {version = ">=1.26.0", markers = "python_version < \"3.13\""}
+numpy = ">=1.23.5"
 types-pytz = ">=2022.1.1"
 
 [[package]]
@@ -648,39 +686,40 @@ files = [
 
 [[package]]
 name = "pbr"
-version = "6.0.0"
+version = "6.1.0"
 description = "Python Build Reasonableness"
 optional = false
 python-versions = ">=2.6"
 files = [
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 ]
 
 [[package]]
 name = "platformdirs"
-version = "4.2.0"
-description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
+version = "4.3.6"
+description = "A small Python package for determining appropriate platform-specific dirs, e.g. a `user data dir`."
 optional = false
 python-versions = ">=3.8"
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 [[package]]
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 python-versions = ">=3.8"
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 ]
 
 [package.dependencies]
@@ -737,17 +776,17 @@ numpy = ">=1.16.6,<2"
 
 [[package]]
 name = "pylint"
-version = "3.1.0"
+version = "3.3.1"
 description = "python code static checker"
 optional = false
-python-versions = ">=3.8.0"
+python-versions = ">=3.9.0"
 files = [
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 [package.dependencies]
-astroid = ">=3.1.0,<=3.2.0-dev0"
+astroid = ">=3.3.4,<=3.4.0-dev0"
 colorama = {version = ">=0.4.5", markers = "sys_platform == \"win32\""}
 dill = [
     {version = ">=0.2", markers = "python_version < \"3.11\""},
@@ -870,70 +909,78 @@ six = ">=1.5"
 
 [[package]]
 name = "pytz"
-version = "2024.1"
+version = "2024.2"
 description = "World timezone definitions, modern and historical"
 optional = false
 python-versions = "*"
 files = [
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 ]
 
 [[package]]
 name = "scipy"
-version = "1.12.0"
+version = "1.14.1"
 description = "Fundamental algorithms for scientific computing in Python"
 optional = false
-python-versions = ">=3.9"
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 [package.dependencies]
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+numpy = ">=1.23.5,<2.3"
 
 [package.extras]
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+dev = ["cython-lint (>=0.12.2)", "doit (>=0.36.0)", "mypy (==1.10.0)", "pycodestyle", "pydevtool", "rich-click", "ruff (>=0.0.292)", "types-psutil", "typing_extensions"]
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+test = ["Cython", "array-api-strict (>=2.0)", "asv", "gmpy2", "hypothesis (>=6.30)", "meson", "mpmath", "ninja", "pooch", "pytest", "pytest-cov", "pytest-timeout", "pytest-xdist", "scikit-umfpack", "threadpoolctl"]
 
 [[package]]
 name = "scitrack"
-version = "2021.5.3"
+version = "2024.10.8"
 description = "SciTrack provides basic logging capabilities to track scientific computations."
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.9"
 files = [
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 ]
 
 [package.extras]
-test = ["black", "isort", "pytest", "pytest-cov", "tox"]
+test = ["nox", "numpy", "pytest", "pytest-cov", "ruff (==0.6.9)"]
 
 [[package]]
 name = "six"
@@ -948,49 +995,49 @@ files = [
 
 [[package]]
 name = "stevedore"
-version = "5.2.0"
+version = "5.4.0"
 description = "Manage dynamic plugins for Python applications"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 files = [
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 ]
 
 [package.dependencies]
-pbr = ">=2.0.0,<2.1.0 || >2.1.0"
+pbr = ">=2.0.0"
 
 [[package]]
 name = "tomli"
-version = "2.0.1"
+version = "2.1.0"
 description = "A lil' TOML parser"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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 ]
 
 [[package]]
 name = "tomlkit"
-version = "0.12.4"
+version = "0.13.2"
 description = "Style preserving TOML library"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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 ]
 
 [[package]]
 name = "tqdm"
-version = "4.66.2"
+version = "4.67.0"
 description = "Fast, Extensible Progress Meter"
 optional = false
 python-versions = ">=3.7"
 files = [
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 ]
 
 [package.dependencies]
@@ -998,19 +1045,20 @@ colorama = {version = "*", markers = "platform_system == \"Windows\""}
 
 [package.extras]
 dev = ["pytest (>=6)", "pytest-cov", "pytest-timeout", "pytest-xdist"]
+discord = ["requests"]
 notebook = ["ipywidgets (>=6)"]
 slack = ["slack-sdk"]
 telegram = ["requests"]
 
 [[package]]
 name = "types-pytz"
-version = "2024.1.0.20240203"
+version = "2024.2.0.20241003"
 description = "Typing stubs for pytz"
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
 
 [[package]]
@@ -1026,24 +1074,24 @@ files = [
 
 [[package]]
 name = "typing-extensions"
-version = "4.10.0"
+version = "4.12.2"
 description = "Backported and Experimental Type Hints for Python 3.8+"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "typing_extensions-4.10.0-py3-none-any.whl", hash = "sha256:69b1a937c3a517342112fb4c6df7e72fc39a38e7891a5730ed4985b5214b5475"},
-    {file = "typing_extensions-4.10.0.tar.gz", hash = "sha256:b0abd7c89e8fb96f98db18d86106ff1d90ab692004eb746cf6eda2682f91b3cb"},
+    {file = "typing_extensions-4.12.2-py3-none-any.whl", hash = "sha256:04e5ca0351e0f3f85c6853954072df659d0d13fac324d0072316b67d7794700d"},
+    {file = "typing_extensions-4.12.2.tar.gz", hash = "sha256:1a7ead55c7e559dd4dee8856e3a88b41225abfe1ce8df57b7c13915fe121ffb8"},
 ]
 
 [[package]]
 name = "tzdata"
-version = "2024.1"
+version = "2024.2"
 description = "Provider of IANA time zone data"
 optional = false
 python-versions = ">=2"
 files = [
-    {file = "tzdata-2024.1-py2.py3-none-any.whl", hash = "sha256:9068bc196136463f5245e51efda838afa15aaeca9903f49050dfa2679db4d252"},
-    {file = "tzdata-2024.1.tar.gz", hash = "sha256:2674120f8d891909751c38abcdfd386ac0a5a1127954fbc332af6b5ceae07efd"},
+    {file = "tzdata-2024.2-py2.py3-none-any.whl", hash = "sha256:a48093786cdcde33cad18c2555e8532f34422074448fbc874186f0abd79565cd"},
+    {file = "tzdata-2024.2.tar.gz", hash = "sha256:7d85cc416e9382e69095b7bdf4afd9e3880418a2413feec7069d533d6b4e31cc"},
 ]
 
 [metadata]
diff --git a/pyproject.toml b/pyproject.toml
index 65093f8..100e446 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -23,7 +23,7 @@ packages = [
 meteor = "meteor.meteor:main"
 
 [tool.poetry.dependencies]
-python = ">=3.10,<3.13""
+python = ">=3.10,<3.13"
 pandas = "^2.1.2"
 pysam = "^0.22.0"
 packaging = "^23.2"