DESCRIPTION

Package: OneNet
Title: Aggregating network inference methods for the identification of microbial guilds
Version: 0.3.1
Authors@R: c(
  person(given = "Raphaëlle", family = "Momal", role = c("aut")), 
  person(given = "Camille", family = "Champion", role = c("aut")), 
  person(given = "Mathilde", family = "Sola", role = c("aut")), 
  person(given = "Mahendra", family = "Mariadassou", role = c("ctb", "cre"),
         email = "mahendra.mariadassou@inrae.fr", comment = c(ORCID = "0000-0003-2986-354X")),
  person(given = "Magali", family = "Berland", role = c("ctb"), 
  comment = c(ORCID = "0000-0002-6762-5350"))
  )
Description: OneNet is a stability based network inference aggregation method from whole metagenome sequencing data, which aims at fostering reproducibility and precision.
License: MIT + file LICENSE
URL: https://github.com/metagenopolis/OneNet
BugReports: https://github.com/metagenopolis/OneNet/issues
Encoding: UTF-8
LazyData: true
Suggests: 
    knitr,
    rmarkdown,
    kableExtra,
    xlsx,
    readxl,
    stringr,
    rlang
VignetteBuilder: knitr
Roxygen: list(markdown =TRUE)
RoxygenNote: 7.3.1
LinkingTo: 
    RcppArmadillo, RcppEigen, Rcpp
Depends:
    R (>= 3.5.0), 
    ggplot2,
    SpiecEasi (>= 1.1.1)
biocViews:
Imports: 
    SPRING,
    EMtree,
    rMAGMA,
    PLNmodels,
    Rfit,
    ggm,
    dplyr,
    grDevices,
    huge,
    magrittr,
    mixedCCA,
    parallel,
    pulsar,
    reshape2,
    tibble,
    sbm,
    igraph,
    tidygraph,
    ggraph,
    ggiraph,
    mvtnorm,
    stats,
    utils,
    RColorBrewer,
    randomcoloR,
    Rcpp, 
    future
Remotes: 
    github::GraceYoon/SPRING@v1.0.4,
    github::Rmomal/EMtree@v2.1,
    gitlab::arcgl/rmagma@b6fb1911,
    github::zdk123/SpiecEasi@v1.1.3