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3-Assessment_template_demo.md

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How to Use the Assessment Template

author: Melissa Monk date: October 2016 autosize: true

Assessment Template: The Details

We'll walk through

  • How to get a copy of the repo

  • How to incorporate your assessment

  • Major sections of the document

  • Iserting tables

    • via R code chunks and txt files

  • Inserting figures

    • via r4SS output and image files

  • Literature cited

Create your assessment repository

  • On GitHub, navigate to the StockAssessment_template repository

  • In the top right, click Fork. The repository is now forked to your account

  • This will take you to the repository on your account. Click the green Clone or download button

  • You can rename the repository if you'd like.

  • Navigate toe Settings in the top right of the repository page.

  • Click the little clipboard to copy the link (choose HTTPS or SSH depending on your account setup)

Repo to RStudio

  • Now, open RStudio, File -> New Project -> Version Control -> Git

  • Copy the repo location in the Repository URL field.

  • Edit the "Project directory name" and "Create project as subdirectory of" as you wish

  • Click Create Project

Suggesting changes to the template

All master changes will be made to Assessment_template. If there are update to Assessment_template, you should be able to pull those changes to your clone.

If you'd like to suggest a change, you can fork the Assessment_template and submit a pull request. HOWEVER, I'd like to hold off on this during the assessment cycle.

Feel free to submit an Issue on GitHub, and we'll likely get to them after the STAR panels.

The YAML

left: 60% Each line is described in the ReadMe PDF

title: 'Status of Blue Rockfish (*Sebastes mystinus*) Along the U.S. Pacific Coast in x2015x' author: '' date: '' output:    pdf_document:     fig_caption: yes     highlight: haddock     includes:      before_body: Titlepage.tex      in_header: header.tex     keep_tex: yes     latex_engine: xelatex     template: Default_template_modified.tex     number_sections: yes     toc: yes     toc_depth: 4

documentclass: article fontsize: 12pt
geometry: margin=1in
csl: CJFAS.csl
bibliography: BibFile.bib

Remainder of the template demo

We're going to work in the Assessment template repo and loosely follow the ReadMe.pdf