environment.yml

name: smaltalign
channels:
- r
- bioconda
- conda-forge
- defaults
dependencies:
- seqtk
- velvet
- smalt
- samtools
- freebayes
- vcflib
- lofreq

- python
- pandas
- prinseq
- biopython
- blast

- r
- r-readr
- r-dplyr
- r-tidyr
- r-ggplot2
- r-stringr
- r-cowplot
- r-seqinr