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Insert-or-ignore for recording which CDS had HMMscan/align done overflows #242

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adraismawur opened this issue Dec 21, 2024 · 0 comments
Open

Insert-or-ignore for recording which CDS had HMMscan/align done overflows #242

adraismawur opened this issue Dec 21, 2024 · 0 comments
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@adraismawur
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BiG-SCAPE 2 Relates to BiG-SCAPE version 2.0 bug Something isn't working no-stale Prevent this issue from going stale planned Will be worked on

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This needs batch insertion. TODO Q1 2025

Line in question:

BiG-SCAPE/big_scape/hmm/hmmer.py

Line 179 in 44a4cc7

insert(state_table).prefix_with("OR IGNORE").values(cds_id=cds._db_id)

@adraismawur adraismawur added bug Something isn't working BiG-SCAPE 2 Relates to BiG-SCAPE version 2.0 planned Will be worked on no-stale Prevent this issue from going stale labels Dec 21, 2024
@adraismawur adraismawur self-assigned this Dec 21, 2024
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BiG-SCAPE 2 Relates to BiG-SCAPE version 2.0 bug Something isn't working no-stale Prevent this issue from going stale planned Will be worked on
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