setup.py

import distribute_setup
distribute_setup.use_setuptools()
from setuptools import setup

setup(
    name='pypgen',
    version='0.2.1',
    author='Nicholas G. Crawford',
    author_email='ngcrawford@gmail.com',
    url='http://pypi.python.org/pypi/pypgen/',
    license='LICENSE.txt',
    description='Genetic diversity metrics from population genomic datasets.',
    long_description=open('README.rst').read(),
    test_suite='nose.collector',
    tests_require=['nose'],
    install_requires=[
        "pysam == 0.6.0"   # Newer versions don't seem to compile correctly.
    ],

    packages=[
            'pypgen.fstats',
            'pypgen.parser',
            'pypgen.misc'
            ],

    package_data={
            '': ['*.txt',
                 '*.rst'],     # READMEs, etc
            'pypgen/data': [
                'example.vcf.gz',
                'example.vcf.gz.tbi',
            ]
        },

    include_package_data=True,

    scripts=[
             'scripts/vcfSNVfstats',
             'scripts/vcfWindowedFstats',
            ],
)