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BED parsing not fully compliant with spec #189

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mdshw5 opened this issue May 18, 2022 · 0 comments
Open

BED parsing not fully compliant with spec #189

mdshw5 opened this issue May 18, 2022 · 0 comments
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mdshw5 commented May 18, 2022

Due to the new AcidBio tests in #188 I now can improve support for BED edge cases in the faidx tool. Currently BED3 support is at 3/18 passed good test cases and 15/15 correctly failed bad test cases. The latter are likely caught at the interpreter level as TypeError or ValueError and could be handled in a more explicit manner.

See here for initial test suite results.
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