_config.yml

# Welcome to Beautiful Jekyll!
# This config file is meant for settings that affect your entire website. When you first
# set up your website you should go through all these settings and edit them, but after
# the initial set up you won't need to come back to this file often.

# --- Required options --- #

# Name of website
title: Michael D. Kessler

# Your name to show in the footer
author: Michael D. Kessler

# moves blog to its own page (called "Blog")
paginate_path: "/blog/page:num/"

# --- List of links in the navigation bar --- #

navbar-links:
#  About Me: "aboutme"
  Blog: "blog"
#  Resources:
#     - Beautiful Jekyll: "https://beautifuljekyll.com"
#     - Learn markdown: "https://www.markdowntutorial.com/"
#   Author's home: "https://deanattali.com"

# --- Logo --- #

# Image to show in the navigation bar - works best with a square image
# Remove this parameter if you don't want an image in the navbar
avatar: "/assets/img/FullSizeRender.face.png"

# By default, the image is cut into a circle. You can disable this behaviour by setting 'round-avatar: false'
round-avatar: true

# If you want to have an image logo in the top-left corner instead of having the title of the website,
# then specify the following parameter
# title-img: /assets/img/HelloPersonV1.jpg


# --- Footer social media links --- #

# Select the social network links that you want to show in the footer.
# Uncomment the links you want to show and add your information to each one.
social-network-links:
  email: "michaelkessler511 at gmail.com"
#  facebook: deanattali
  github: mdkessler
  twitter: DNApriori
#  reddit: yourname
  linkedin: michaelkessler511
#  xing: yourname
#  stackoverflow: "3943160/daattali"
#  snapchat: deanat78
#  instagram: deanat78
#  youtube: user/deanat78
#  spotify: yourname
#  telephone: +14159998888
#  steam: deanat78
#  twitch: yourname
#  yelp: yourname
#  telegram: yourname
#  calendly: yourname
#  mastodon: instance.url/@username
#  ORCID: your ORCID ID
#  google-scholar: your google scholar

# If you want to show a link to an RSS in the footer, add the site description here.
# If you don't want to show an RSS link, remove the following line.
# rss-description: This website is a virtual proof that I'm awesome

# --- General options --- #

# Select which social network share links to show in posts
share-links-active:
  twitter: true
  facebook: true
  linkedin: true
  vk: false

# How to display the link to your website in the footer
# Remove this if you don't want a link in the footer
url-pretty: "MyWebsite.com"

# Excerpt word length - Truncate the excerpt of each post on the feed page to the specified number of words
excerpt_length: 50

# Whether or not to show an excerpt for every blog post in the feed page
feed_show_excerpt: true

# Whether or not to show a list of tags below each post preview in the feed page
feed_show_tags: true

# The keywords to associate with your website, for SEO purposes
keywords: "Kessler,Michael Kessler,Michael D. Kessler,Bioinformatics,Human Genetics,Cancer Genetics,Genomics,Cancer,Cancer Genomics,DNMs,De Novo Mutations,CHIP,Clonal Hematopoiesis,Biomedical Science,Cancer Ancestry,Mutations,Clinical Genomics, Bioinformatics Analysis, Bioinformatic Algorithms, Machine Learning, Beginners, Machine Learning Biology,Genetic Data Science,Genomic Data Science,Biological Data Science,Translational Genetics,Translational Bioinformatics,Translational Epidemiology,Epidemiology"

# --- Colours / background image --- #

# Personalize the colours in your website. Colour values can be any valid CSS colour

navbar-col: "#EAEAEA"
navbar-text-col: "#404040"
navbar-border-col: "#DDDDDD"
page-col: "#FFFFFF"
text-col: "#404040"
link-col: "#008AFF"
hover-col: "#0085A1"
footer-col: "#EAEAEA"
footer-text-col: "#777777"
footer-link-col: "#404040"

# Alternatively, the navbar, footer, and page background can be set to an image
# instead of colour

#navbar-img: "/assets/img/bgimage.png"
#footer-img: "/assets/img/bgimage.png"
#page-img: "/assets/img/bgimage.png"

# Suggest a colour for mobile browsers to use as the browser's theme. This is only supported by a few mobile browsers.
#mobile-theme-col: "#0085A1"

# For any extra visual customization, you can include additional CSS files in every page on your site. List any custom CSS files here
#site-css:
#  - "/assets/css/custom-styles.css"

# If you have common JavaScript files that should be included in every page, list them here
#site-js:
#  - "/assets/js/custom-script.js"

# --- Web Analytics Section --- #

# Fill in your Google Analytics gtag.js ID to track your website using gtag
#gtag: ""

# Fill in your Google Analytics ID to track your website using Google Analytics
#google_analytics: ""

# Google Tag Manager ID
#gtm: ""

# Matomo (aka Piwik) Web statistics
# Uncomment the following section to enable Matomo. The opt-out parameter controls
# whether or not you want to allow users to opt out of tracking.
#matomo:
#  site_id: "9"
#  uri: "demo.wiki.pro"
#  opt-out: true

# --- Comments --- #

# To use Disqus comments, sign up to https://disqus.com and fill in your Disqus shortname (NOT the userid)
#disqus: ""

# To use Facebook Comments, create a Facebook app and fill in the Facebook App ID
#fb_comment_id: ""

# To use Utterances comments: (0) uncomment the following section, (1) fill in
# "repository" (make sure the repository is public), (2) Enable Issues in your repository,
# (3) Install the Utterances app in your repository https://github.com/apps/utterances
# See more details about the parameters below at https://utteranc.es/
#utterances:
#  repository: # GitHub username/repository eg. "daattali/beautiful-jekyll"
#  issue-term: title   # Mapping between blog posts and GitHub issues
#  theme: github-light # Utterances theme
#  label: blog-comments # Label that will be assigned to GitHub Issues created by Utterances

# To use Staticman comments, first invite `staticmanlab` as a collaborator to your repository and
# accept the invitation by going to `https://staticman3.herokuapp.com/v3/connect/github/<username>/<repo-name>`.
# Then uncomment the following section and fill in "repository" and "branch".
# If you want to use reCaptcha for staticman (optional for spam protection), then fill
# in the "siteKey" and "secret" parameters below and also in `staticman.yml`.
# See more details at https://staticman.net/
#staticman:
#  repository : # GitHub username/repository eg. "daattali/beautiful-jekyll"
#  branch     : master # If you're not using `master` branch, then you also need to update the `branch` parameter in `staticman.yml`
#  endpoint   : # (optional) URL of your own deployment, with a trailing slash eg. https://<your-api>/v3/entry/github/ (will fallback to a public GitLab instance)
#  reCaptcha:
#    siteKey  : # Use your own site key, you need to apply for one on Google
#    secret   : # ENCRYPT your password by going to https://staticman3.herokuapp.com/v3/encrypt/<your-site-secret>

# --- Misc --- #

# Ruby Date Format to show dates of posts
date_format: "%B %-d, %Y"

# Facebook App ID
#fb_app_id: ""

# --- You don't need to touch anything below here (but you can if you want) --- #

# Output options (more information on Jekyll's site)
timezone: "America/Toronto"
markdown: kramdown
highlighter: rouge
permalink: /:year-:month-:day-:title/
paginate: 5

kramdown:
  input: GFM

# Default YAML values (more information on Jekyll's site)
defaults:
  -
    scope:
      path: ""
      type: "posts"
    values:
      layout: "post"
      comments: true  # add comments to all blog posts
      social-share: true # add social media sharing buttons to all blog posts
  -
    scope:
      path: "" # any file that's not a post will be a "page" layout by default
    values:
      layout: "page"

# Exclude these files from production site
exclude:
  - CHANGELOG.md
  - CNAME
  - Gemfile
  - Gemfile.lock
  - LICENSE
  - README.md
  - screenshot.png
  - docs/

plugins:
  - jekyll-paginate
  - jekyll-sitemap

# Beautiful Jekyll / Dean Attali
# 2fc73a3a967e97599c9763d05e564189