nf-core pipelines have been configured for use on the Tufts HPC clusters operated by Research Technology at Tufts University.
To use Tufts's profile, run the pipeline with -profile tufts.
Example: nextflow run <pipeline> -profile tufts
Users can also put the nextflow ... command into a batch script and submit the job to computing nodes by sbatch or launch interative jobs to computing nodes by srun. Using this way, both nextflow manager processes and tasks will run on the allocated compute nodes using the local executor. It is recommended to use -profile singularity
Example: nextflow run <pipeline> -profile singularity
By default, the batch partition is used for job submission. Other partitions can be specified using the --partition <PARTITION NAME> argument to the run.
Before running the pipeline, you will need to load the Nextflow module by:
module purge ## Optional but recommended
module load nextflow singularity