biblio.bib

% @inbook{doi:10.4018/978-1-60960-491-2.ch019,
%   author = {Garcia, MU and Stahl, Olivier and Finetti, Pascal and Birnbaum, Daniel and Bertucci, François and Bidaut, Ghislain},
%   title = {Linking Interactome to Disease : A Network-Based Analysis of Metastatic Relapse in Breast Cancer},
%   booktitle = {Handbook of Research on Computational and Systems Biology: Interdisciplinary Applications},
%   year = {2011},
%   doi = {10.4018/978-1-60960-491-2.ch019},
%   pages = {406--427}
% }

@article{doi:10.1093/bioinformatics/bts025,
  author = {Garcia, MU and Millat-Carus, Raphaelle and Bertucci, François and Finetti, Pascal and Birnbaum, Daniel and Bidaut, Ghislain},
  title = {Interactome–transcriptome integration for predicting distant metastasis in breast cancer},
  journaltitle = {Bioinformatics},
  year = {2012},
  doi = {10.1093/bioinformatics/bts025},
  number = {5},
  pages = {672-678},
  volume = {28}
}

% @inbook{doi:10.1007/978-1-62703-721-1_5,
%   author = {Garcia, MU and Finetti, Pascal and Bertucci, Francois and Birnbaum, Daniel and Bidaut, Ghislain},
%   title = {Detection of Driver Protein Complexes in Breast Cancer Metastasis by Large-Scale Transcriptome--Interactome Integration},
%   bookTitle = {Gene Function Analysis},
%   year = {2014},
%   doi = {10.1007/978-1-62703-721-1_5},
%   pages = {67--85}
% }

% @inbook{Garcia2013,
%   author = {Garcia, MU and Millat-Carus, Raphaëlle and Bertucci, François and Finetti, Pascal and Guille, Arnaud and Adelaïde, José and Bekhouche,  Ismahane and Sabatier, Renaud and Chaffanet, Max and Birnbaum, Daniel and Bidaut, Ghislain},
%   title = {CNV-Interactome-Transcriptome Integration to detect driver genes in cancerology},
%   booktitle = {Microarray Image and Data Analysis: Theory and Practice},
%   year = {2013},
%   isbn = {978-1-46658-682-6},
%   pages = {331--338}
% }

% @article{doi:10.1021/pr401258d,
%   author = {Bonacci, Thomas and Audebert, Stéphane and Camoin, Luc and Baudelet, Emilie and Bidaut, Ghislain and Garcia, MU and Witzel, Ini-Isabée and Perkins, Neil D. and Borg, Jean-Paul and Iovanna, Juan-Lucio and Soubeyran, Philippe},
%   title = {Identification of New Mechanisms of Cellular Response to Chemotherapy by Tracking Changes in Post-Translational Modifications by Ubiquitin and Ubiquitin-Like Proteins},
%   journaltitle = {Journal of Proteome Research},
%   year = {2014},
%   doi = {10.1021/pr401258d},
%   number = {5},
%   pages = {2478-2494},
%   volume = {13}
% }

% @article{doi.org/10.1016/j.ejcb.2018.02.004,
%   author = {Tong Liu and Jian Zhao and Cristian Ibarra and Garcia, MU and Per Uhlén and Monica Nistér},
%   title = {Glycosylation Controls Sodium-Calcium Exchanger 3 Sub-Cellular Localization During Cell Cycle},
%   journaltitle = {European Journal of Cell Biology},
%   year = {2018},
%   doi = {10.1016/j.ejcb.2018.02.004},
%   number = {3},
%   pages = {190-203},
%   volume = {97},
% }

@article{ 10.12688/f1000research.16665.2,
  author = { Garcia, MU and Juhos, S and Larsson, M and Olason, PI and Martin, M and Eisfeldt, J and DiLorenzo, S and Sandgren, J and Díaz De Ståhl, T and Ewels, P and Wirta, V and Nistér, M and Käller, M and Nystedt, B},
  title = {Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants [version 2; peer review: 2 approved]},
  journaltitle = {F1000Research},
  doi = {10.12688/f1000research.16665.2},
  number = {63},
  volume = {9},
  year = {2020}
}

@article{ 10.1038/s41587-020-0439-x,
  author = { Ewels, PA and Peltzer, A and Fillinger, S and Patel, H and Alneberg, J and Wilm, A and Garcia, MU and Di Tommaso, P and Nahnsen, S},
  title = {The nf-core framework for community-curated bioinformatics pipelines},
  journaltitle = {Nature Biotechnology},
  doi = {10.1038/s41587-020-0439-x},
  number = {38},
  pages = {267-278},
  year = {2020}
}

@article{ 10.7717/peerj.10947,
  author = { Fellows Yates, JA and al},
  title = {Reproducible, portable, and efficient ancient genome reconstruction with nf-core/eager},
  journaltitle = {PeerJ},
  doi = {10.7717/peerj.10947},
  volume = {9},
  number = {e10947},
  year = {2021}
}