rulegraph.svg

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<!-- Title: snakemake_dag Pages: 1 -->
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<!-- 1 -->
<g id="node2" class="node">
<title>1</title>
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<!-- 1&#45;&gt;0 -->
<g id="edge1" class="edge">
<title>1&#45;&gt;0</title>
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<!-- 3 -->
<g id="node4" class="node">
<title>3</title>
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<!-- 1&#45;&gt;3 -->
<g id="edge16" class="edge">
<title>1&#45;&gt;3</title>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="522.62,-460.58 531.91,-455.49 521.47,-453.68 522.62,-460.58"/>
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<!-- 4 -->
<g id="node5" class="node">
<title>4</title>
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<!-- 1&#45;&gt;4 -->
<g id="edge17" class="edge">
<title>1&#45;&gt;4</title>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="72.96,-403.1 64.93,-396.19 66.9,-406.6 72.96,-403.1"/>
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<!-- 5 -->
<g id="node6" class="node">
<title>5</title>
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<text text-anchor="middle" x="137" y="-375.5" font-family="sans" font-size="10.00">fastqscreen</text>
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<!-- 1&#45;&gt;5 -->
<g id="edge18" class="edge">
<title>1&#45;&gt;5</title>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="140.5,-406.19 137,-396.19 133.5,-406.19 140.5,-406.19"/>
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<!-- 8 -->
<g id="node9" class="node">
<title>8</title>
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<text text-anchor="middle" x="260" y="-303.5" font-family="sans" font-size="10.00">multiqc</text>
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<!-- 1&#45;&gt;8 -->
<g id="edge22" class="edge">
<title>1&#45;&gt;8</title>
<path fill="none" stroke="grey" stroke-width="2" d="M144.99,-503.6C159.04,-473.55 189.64,-410.29 221,-360 226.8,-350.69 233.74,-340.91 240.14,-332.33"/>
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<!-- 2 -->
<g id="node3" class="node">
<title>2</title>
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<text text-anchor="middle" x="918" y="-231.5" font-family="sans" font-size="10.00">star_statistics</text>
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<!-- 2&#45;&gt;0 -->
<g id="edge2" class="edge">
<title>2&#45;&gt;0</title>
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<!-- 3&#45;&gt;2 -->
<g id="edge15" class="edge">
<title>3&#45;&gt;2</title>
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<!-- 6 -->
<g id="node7" class="node">
<title>6</title>
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<text text-anchor="middle" x="829" y="-303.5" font-family="sans" font-size="10.00">bigwig</text>
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<!-- 3&#45;&gt;6 -->
<g id="edge20" class="edge">
<title>3&#45;&gt;6</title>
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<!-- 7 -->
<g id="node8" class="node">
<title>7</title>
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<!-- 3&#45;&gt;7 -->
<g id="edge21" class="edge">
<title>3&#45;&gt;7</title>
<path fill="none" stroke="grey" stroke-width="2" d="M586.07,-445.86C637.09,-439.52 750.69,-423.42 843,-396 844.43,-395.57 845.88,-395.12 847.34,-394.63"/>
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<!-- 3&#45;&gt;8 -->
<g id="edge29" class="edge">
<title>3&#45;&gt;8</title>
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<!-- 9 -->
<g id="node10" class="node">
<title>9</title>
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<!-- 3&#45;&gt;9 -->
<g id="edge30" class="edge">
<title>3&#45;&gt;9</title>
<path fill="none" stroke="grey" stroke-width="2" d="M531.8,-437.6C507.53,-427.42 471.38,-412.27 441.93,-399.93"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="443.2,-396.66 432.62,-396.03 440.49,-403.12 443.2,-396.66"/>
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<!-- 10 -->
<g id="node11" class="node">
<title>10</title>
<path fill="none" stroke="#56d873" stroke-width="2" d="M536.5,-396C536.5,-396 469.5,-396 469.5,-396 463.5,-396 457.5,-390 457.5,-384 457.5,-384 457.5,-372 457.5,-372 457.5,-366 463.5,-360 469.5,-360 469.5,-360 536.5,-360 536.5,-360 542.5,-360 548.5,-366 548.5,-372 548.5,-372 548.5,-384 548.5,-384 548.5,-390 542.5,-396 536.5,-396"/>
<text text-anchor="middle" x="503" y="-375.5" font-family="sans" font-size="10.00">clipping_profile</text>
</g>
<!-- 3&#45;&gt;10 -->
<g id="edge31" class="edge">
<title>3&#45;&gt;10</title>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="525.66,-401.73 516.68,-396.1 520.2,-406.1 525.66,-401.73"/>
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<!-- 11 -->
<g id="node12" class="node">
<title>11</title>
<path fill="none" stroke="#d8a456" stroke-width="2" d="M653.5,-396C653.5,-396 578.5,-396 578.5,-396 572.5,-396 566.5,-390 566.5,-384 566.5,-384 566.5,-372 566.5,-372 566.5,-366 572.5,-360 578.5,-360 578.5,-360 653.5,-360 653.5,-360 659.5,-360 665.5,-366 665.5,-372 665.5,-372 665.5,-384 665.5,-384 665.5,-390 659.5,-396 653.5,-396"/>
<text text-anchor="middle" x="616" y="-375.5" font-family="sans" font-size="10.00">read_distribution</text>
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<!-- 3&#45;&gt;11 -->
<g id="edge32" class="edge">
<title>3&#45;&gt;11</title>
<path fill="none" stroke="grey" stroke-width="2" d="M573.09,-431.7C579.92,-423.3 588.26,-413.07 595.76,-403.86"/>
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<!-- 12 -->
<g id="node13" class="node">
<title>12</title>
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<text text-anchor="middle" x="259" y="-375.5" font-family="sans" font-size="10.00">read_GC</text>
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<!-- 3&#45;&gt;12 -->
<g id="edge33" class="edge">
<title>3&#45;&gt;12</title>
<path fill="none" stroke="grey" stroke-width="2" d="M531.98,-445.01C484.74,-437.68 384.29,-420.55 302,-396 300.75,-395.63 299.48,-395.23 298.2,-394.82"/>
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<!-- 14 -->
<g id="node15" class="node">
<title>14</title>
<path fill="none" stroke="#d6d856" stroke-width="2" d="M788.5,-396C788.5,-396 695.5,-396 695.5,-396 689.5,-396 683.5,-390 683.5,-384 683.5,-384 683.5,-372 683.5,-372 683.5,-366 689.5,-360 695.5,-360 695.5,-360 788.5,-360 788.5,-360 794.5,-360 800.5,-366 800.5,-372 800.5,-372 800.5,-384 800.5,-384 800.5,-390 794.5,-396 788.5,-396"/>
<text text-anchor="middle" x="742" y="-375.5" font-family="sans" font-size="10.00">compile_star_counts</text>
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<!-- 3&#45;&gt;14 -->
<g id="edge35" class="edge">
<title>3&#45;&gt;14</title>
<path fill="none" stroke="grey" stroke-width="2" d="M586,-438.67C612.7,-428.46 654.29,-412.55 687.82,-399.72"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="689.4,-402.87 697.49,-396.02 686.9,-396.33 689.4,-402.87"/>
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<!-- 4&#45;&gt;0 -->
<g id="edge14" class="edge">
<title>4&#45;&gt;0</title>
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<!-- 4&#45;&gt;8 -->
<g id="edge28" class="edge">
<title>4&#45;&gt;8</title>
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<!-- 5&#45;&gt;0 -->
<g id="edge8" class="edge">
<title>5&#45;&gt;0</title>
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<!-- 5&#45;&gt;8 -->
<g id="edge24" class="edge">
<title>5&#45;&gt;8</title>
<path fill="none" stroke="grey" stroke-width="2" d="M167.09,-359.88C184.17,-350.16 205.67,-337.92 223.68,-327.67"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="225.78,-330.5 232.74,-322.51 222.32,-324.42 225.78,-330.5"/>
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<!-- 6&#45;&gt;0 -->
<g id="edge11" class="edge">
<title>6&#45;&gt;0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M830.02,-287.9C831.64,-242.58 828.82,-119.64 755,-72 716.48,-47.14 584.85,-29.99 519.47,-22.8"/>
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<!-- 7&#45;&gt;6 -->
<g id="edge19" class="edge">
<title>7&#45;&gt;6</title>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="851.37,-329.81 842.44,-324.1 845.87,-334.13 851.37,-329.81"/>
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<!-- 8&#45;&gt;0 -->
<g id="edge13" class="edge">
<title>8&#45;&gt;0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M255.44,-287.91C245.31,-245.72 225.76,-135.41 279,-72 300.13,-46.83 392.35,-30.81 444.93,-23.54"/>
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<!-- 9&#45;&gt;8 -->
<g id="edge27" class="edge">
<title>9&#45;&gt;8</title>
<path fill="none" stroke="grey" stroke-width="2" d="M359.71,-359.88C340.47,-349.67 316.01,-336.7 296.12,-326.16"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="297.54,-322.94 287.06,-321.35 294.26,-329.13 297.54,-322.94"/>
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<!-- 10&#45;&gt;8 -->
<g id="edge25" class="edge">
<title>10&#45;&gt;8</title>
<path fill="none" stroke="grey" stroke-width="2" d="M457.41,-362.81C454.23,-361.85 451.07,-360.91 448,-360 395.83,-344.59 335.22,-327.68 297.24,-317.2"/>
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<!-- 11&#45;&gt;8 -->
<g id="edge23" class="edge">
<title>11&#45;&gt;8</title>
<path fill="none" stroke="grey" stroke-width="2" d="M566.42,-362.08C563.58,-361.35 560.76,-360.65 558,-360 465.05,-338.18 353.93,-320.64 297.25,-312.29"/>
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<!-- 12&#45;&gt;8 -->
<g id="edge26" class="edge">
<title>12&#45;&gt;8</title>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="263.11,-334.15 259.76,-324.1 256.11,-334.05 263.11,-334.15"/>
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<!-- 13 -->
<g id="node14" class="node">
<title>13</title>
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<!-- 13&#45;&gt;0 -->
<g id="edge7" class="edge">
<title>13&#45;&gt;0</title>
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<!-- 15 -->
<g id="node16" class="node">
<title>15</title>
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<!-- 13&#45;&gt;15 -->
<g id="edge36" class="edge">
<title>13&#45;&gt;15</title>
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<!-- 17 -->
<g id="node18" class="node">
<title>17</title>
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<text text-anchor="middle" x="754" y="-159.5" font-family="sans" font-size="10.00">deseq2_group</text>
</g>
<!-- 13&#45;&gt;17 -->
<g id="edge38" class="edge">
<title>13&#45;&gt;17</title>
<path fill="none" stroke="grey" stroke-width="2" d="M664.3,-287.87C682.07,-263.14 715.04,-217.24 735.67,-188.51"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="738.66,-190.35 741.65,-180.19 732.98,-186.27 738.66,-190.35"/>
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<!-- 19 -->
<g id="node20" class="node">
<title>19</title>
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<text text-anchor="middle" x="478" y="-231.5" font-family="sans" font-size="10.00">deseq2_init</text>
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<!-- 13&#45;&gt;19 -->
<g id="edge40" class="edge">
<title>13&#45;&gt;19</title>
<path fill="none" stroke="grey" stroke-width="2" d="M613.38,-289.46C587.05,-278.87 552.05,-264.79 524.24,-253.6"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="525.31,-250.26 514.72,-249.77 522.69,-256.75 525.31,-250.26"/>
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<!-- 14&#45;&gt;13 -->
<g id="edge34" class="edge">
<title>14&#45;&gt;13</title>
<path fill="none" stroke="grey" stroke-width="2" d="M719.75,-359.7C708.42,-350.88 694.47,-340.03 682.18,-330.47"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="684.03,-327.48 673.99,-324.1 679.74,-333.01 684.03,-327.48"/>
</g>
<!-- 15&#45;&gt;0 -->
<g id="edge3" class="edge">
<title>15&#45;&gt;0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M644.86,-143.87C635.94,-124.27 619.01,-92.27 596,-72 573.69,-52.35 542.84,-38.6 518.86,-30.04"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="519.97,-26.72 509.38,-26.8 517.71,-33.35 519.97,-26.72"/>
</g>
<!-- 16 -->
<g id="node17" class="node">
<title>16</title>
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<text text-anchor="middle" x="688" y="-87.5" font-family="sans" font-size="10.00">deseq2_QC</text>
</g>
<!-- 16&#45;&gt;0 -->
<g id="edge4" class="edge">
<title>16&#45;&gt;0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M652.12,-76.81C614.76,-64.11 556.55,-44.33 518.84,-31.52"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="519.85,-28.17 509.26,-28.26 517.6,-34.79 519.85,-28.17"/>
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<!-- 17&#45;&gt;0 -->
<g id="edge10" class="edge">
<title>17&#45;&gt;0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M755.02,-143.64C755.2,-123.53 752.19,-90.75 733,-72 703.03,-42.73 581.57,-27.86 519.26,-22.03"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="519.35,-18.52 509.07,-21.11 518.72,-25.49 519.35,-18.52"/>
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<!-- 17&#45;&gt;16 -->
<g id="edge37" class="edge">
<title>17&#45;&gt;16</title>
<path fill="none" stroke="grey" stroke-width="2" d="M737.69,-143.7C729.69,-135.22 719.93,-124.86 711.18,-115.58"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="713.53,-112.98 704.13,-108.1 708.44,-117.78 713.53,-112.98"/>
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<!-- 18 -->
<g id="node19" class="node">
<title>18</title>
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</g>
<!-- 18&#45;&gt;0 -->
<g id="edge5" class="edge">
<title>18&#45;&gt;0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M416.4,-143.96C405.94,-134.63 394.6,-122.11 389,-108 383.09,-93.13 380.96,-85.83 389,-72 401.09,-51.19 424.74,-37.88 445.17,-29.79"/>
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<!-- 20 -->
<g id="node21" class="node">
<title>20</title>
<path fill="none" stroke="#56a2d8" stroke-width="2" d="M468,-108C468,-108 410,-108 410,-108 404,-108 398,-102 398,-96 398,-96 398,-84 398,-84 398,-78 404,-72 410,-72 410,-72 468,-72 468,-72 474,-72 480,-78 480,-84 480,-84 480,-96 480,-96 480,-102 474,-108 468,-108"/>
<text text-anchor="middle" x="439" y="-87.5" font-family="sans" font-size="10.00">deseq2_qplot</text>
</g>
<!-- 18&#45;&gt;20 -->
<g id="edge41" class="edge">
<title>18&#45;&gt;20</title>
<path fill="none" stroke="grey" stroke-width="2" d="M439,-143.7C439,-135.98 439,-126.71 439,-118.11"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="442.5,-118.1 439,-108.1 435.5,-118.1 442.5,-118.1"/>
</g>
<!-- 21 -->
<g id="node22" class="node">
<title>21</title>
<path fill="none" stroke="#567bd8" stroke-width="2" d="M541.5,-108C541.5,-108 510.5,-108 510.5,-108 504.5,-108 498.5,-102 498.5,-96 498.5,-96 498.5,-84 498.5,-84 498.5,-78 504.5,-72 510.5,-72 510.5,-72 541.5,-72 541.5,-72 547.5,-72 553.5,-78 553.5,-84 553.5,-84 553.5,-96 553.5,-96 553.5,-102 547.5,-108 541.5,-108"/>
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<!-- 18&#45;&gt;21 -->
<g id="edge42" class="edge">
<title>18&#45;&gt;21</title>
<path fill="none" stroke="grey" stroke-width="2" d="M460.51,-143.7C471.46,-134.88 484.95,-124.03 496.82,-114.47"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="499.14,-117.1 504.74,-108.1 494.76,-111.65 499.14,-117.1"/>
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<!-- 22 -->
<g id="node23" class="node">
<title>22</title>
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<!-- 18&#45;&gt;22 -->
<g id="edge43" class="edge">
<title>18&#45;&gt;22</title>
<path fill="none" stroke="grey" stroke-width="2" d="M408.67,-143.88C391.25,-134.04 369.27,-121.64 350.98,-111.31"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="352.5,-108.15 342.07,-106.28 349.05,-114.24 352.5,-108.15"/>
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<!-- 19&#45;&gt;18 -->
<g id="edge39" class="edge">
<title>19&#45;&gt;18</title>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="456.45,-187.14 448.53,-180.1 450.34,-190.54 456.45,-187.14"/>
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<!-- 20&#45;&gt;0 -->
<g id="edge9" class="edge">
<title>20&#45;&gt;0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M449.63,-71.7C454.63,-63.56 460.69,-53.69 466.21,-44.7"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="469.24,-46.46 471.49,-36.1 463.28,-42.79 469.24,-46.46"/>
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<!-- 21&#45;&gt;0 -->
<g id="edge12" class="edge">
<title>21&#45;&gt;0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M515.12,-71.7C510.01,-63.56 503.8,-53.69 498.16,-44.7"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="501.04,-42.71 492.75,-36.1 495.11,-46.43 501.04,-42.71"/>
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<!-- 22&#45;&gt;0 -->
<g id="edge6" class="edge">
<title>22&#45;&gt;0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M342.2,-77.6C370.23,-65.85 414.08,-47.47 445.19,-34.43"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="446.94,-37.49 454.81,-30.4 444.23,-31.04 446.94,-37.49"/>
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</svg>