From 944503fe42bc084094955752cf1f5214809c9782 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Matthias=20K=C3=BCmmmerer?=
 <matthias.kuemmerer@bethgelab.org>
Date: Tue, 7 Nov 2023 16:00:19 +0100
Subject: [PATCH] try fixing failing github test
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Signed-off-by: Matthias Kümmmerer <matthias.kuemmerer@bethgelab.org>
---
 .github/workflows/test-package-conda.yml | 30 +++++++++++++++++-------
 1 file changed, 22 insertions(+), 8 deletions(-)

diff --git a/.github/workflows/test-package-conda.yml b/.github/workflows/test-package-conda.yml
index 2479f4a..cb8dd92 100644
--- a/.github/workflows/test-package-conda.yml
+++ b/.github/workflows/test-package-conda.yml
@@ -14,11 +14,25 @@ jobs:
         - "3.9"
 
     steps:
-    - uses: actions/checkout@v3
-    - name: Set up Python
-      uses: actions/setup-python@v4
+    - uses: actions/checkout@v2
+    - uses: conda-incubator/setup-miniconda@v2
       with:
         python-version: ${{ matrix.python-version }}
+        #activate-environment: anaconda-client-env
+        #environment-file: etc/example-environment.yml
+        #condarc-file: etc/example-condarc.yml
+        #auto-activate-base: false
+        channels: conda-forge
+    - name: Conda info
+      shell: bash -el {0}
+      run: conda info
+    - name: Conda list
+      shell: pwsh
+        run: conda list
+#    - name: Set up Python
+#      uses: actions/setup-python@v4
+#      with:
+#        python-version: ${{ matrix.python-version }}
 #    - name: Add conda to system path
 #      run: |
 #        # $CONDA is an environment variable pointing to the root of the miniconda directory
@@ -26,13 +40,14 @@ jobs:
     - name: Install dependencies
       run: |
         # conda env update --file environment.yml --name base
-        #conda config --add channels conda-forge
-        pip install \
+        # conda config --add channels conda-forge
+        conda install \
           boltons \
           cython \
           deprecation \
           dill \
           diskcache \
+          h5py \
           imageio \
           natsort \
           numba \
@@ -52,7 +67,7 @@ jobs:
           sphinx \
           torchvision \
           tqdm
-        pip install h5py  # https://github.com/h5py/h5py/issues/1880
+        #pip install h5py  # https://github.com/h5py/h5py/issues/1880
 #    - name: Lint with flake8
 #      run: |
 #        conda install flake8
@@ -62,8 +77,7 @@ jobs:
 #        flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
     - name: Test with pytest
       run: |
-        # conda install pytest hypothesis
-        pip install pytest hypothesis
+        conda install pytest hypothesis
 
         python setup.py build_ext --inplace
         python -m pytest --nomatlab --notheano tests