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setup.py
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setup.py
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from pathlib import Path
from setuptools import setup, find_packages
# Read the version from file
with (Path(__file__).parent/'bidscoin'/'version.txt').open('r') as fid:
version = fid.read().strip()
# Read the contents of the README file
with (Path(__file__).parent/'README.rst').open('r') as fid:
readme = fid.read()
# Read the contents of the requirements file
with (Path(__file__).parent/'requirements.txt').open('r') as fid:
requirements = fid.read().splitlines()
phys2bidscoin = ['bioread >=1.0.5', 'pymatreader>=0.0.24', 'duecredit', 'phys2bids>=2.0.0,<3.0.0']
spec2nii2bids = ['spec2nii2bids']
deface = ['pydeface', 'drmaa']
all_extras = phys2bidscoin + spec2nii2bids + deface
setup(name = 'bidscoin', # Required
version = version, # Required
packages = find_packages(), # Required
install_requires = requirements,
python_requires = '>=3.8',
setup_requires = ["pytest-runner"],
tests_require = ["pytest", "pytest-cov", "coverage"],
extras_require = {'all': all_extras,
'phys2bidscoin': phys2bidscoin,
'spec2nii2bids': spec2nii2bids,
'deface': deface},
package_data = {'': ['*version.txt', '*.yaml', 'bidscoin_logo.png', 'bidscoin.ico', 'rightarrow.png']},
entry_points = {'console_scripts': ['bidscoin = bidscoin.bidscoin:main',
'bidseditor = bidscoin.bidseditor:main',
'bidsmapper = bidscoin.bidsmapper:main',
'bidscoiner = bidscoin.bidscoiner:main',
'rawmapper = bidscoin.rawmapper:main',
'dicomsort = bidscoin.dicomsort:main',
'echocombine = bidscoin.echocombine:main',
'deface = bidscoin.deface:main',
'medeface = bidscoin.medeface:main',
'bidsparticipants = bidscoin.bidsparticipants:main',
'physio2tsv = bidscoin.physio2tsv:main',
'plotphysio = bidscoin.plotphysio:main']},
classifiers = ['Programming Language :: Python :: 3',
'License :: OSI Approved :: GNU General Public License v3 (GPLv3)',
'Operating System :: OS Independent'],
keywords = 'bids mri imaging neuroimaging dicom par rec nifti pet defacing echo-combination',
description = 'Converts and organises raw MRI data-sets according to the Brain Imaging Data Structure (BIDS)',
long_description = readme,
long_description_content_type = 'text/x-rst',
author = 'Marcel Zwiers',
author_email = '[email protected]',
url = 'https://github.com/Donders-Institute/bidscoin')