From d16b90fb28a7c49e9fb5f930699f1085d6f950d0 Mon Sep 17 00:00:00 2001 From: masikol Date: Fri, 26 Mar 2021 11:40:01 +0300 Subject: [PATCH] add CHANGELOG --- CHANGELOG.md | 104 +++++++++++++++++++++++++++++++++++++++++++++++ combinator-FQ.py | 2 +- 2 files changed, 105 insertions(+), 1 deletion(-) create mode 100644 CHANGELOG.md diff --git a/CHANGELOG.md b/CHANGELOG.md new file mode 100644 index 0000000..900f247 --- /dev/null +++ b/CHANGELOG.md @@ -0,0 +1,104 @@ +# combinator-FQ changelog + +## 2021-03-26 edition + +- performed total refactoring. Memory usage is reduced. Made some cosmetic fixes. +- Moved combinator-FQ to the separate (this) repository from [https://github.com/masikol/cager-misc](https://github.com/masikol/cager-misc). + +### Version changes: + +`1.3.f -> 1.4.a` + +## 2021-01-21 edition + +- bug fix (combinator used to ternimate in the end if it couldn't extract ordinal number of contig from contig's name); + +### Version changes: + +`1.3.e -> 1.3.f` + +## 2020-12-03 edition + +- `-o` option addded. + +### Version changes: + +`1.3.d -> 1.3.e` + +## 2020-10-08 edition + +- combinator-FQ now rounds coverage with 2 trailing digits. + +### Version changes: + +`1.3.c --> 1.3.d` + +## 2020-06-15 edition. + +- errorneous handling of SPADEs's `NODE_1` with zero coverage fixed; + +### Version changes: + +`1.3.b --> 1.3.c` + +## 2020-04-24 edition. + +- compatibility with a5 improved; + +### Version changes: + +`1.3.a --> 1.3.b` + +## 2020-04-15 edition. + +- calculating of expected genome length is improved; + +### Version changes: + +`1.2.b --> 1.3.a`; + +## 2020-04-10 evening edition. + +- a5-compatibility bug fixed; + +### Version changes: + +`1.2.a --> 1.2.b` + +## 2020-04-10 edition. + +- calculating of expected genome length is embedded once again -- not considering contigs multiplicity; +- fasta-GC-content is added; + +### Version changes: + +`1.1.c --> 1.2.a` + +## 2020-03-18 edition. + +- calculating of expected genome length is disabled because it's impossible to handle high-copy replicons properly; + +### Version changes: + +`1.1.b --> 1.1.c` + +## 2020-03-09 edition. + +- calculation of expected genome length fixed; + +### Version changes: + +`1.1.a --> 1.1.b` + +## 2020-03-07 edition. + +- output file separated into three: `adjacent_contigs`. `full_matching_log` and `summary`; +- A5-coverage summary bug fixed; + +### Version changes: + +`1.0.a --> 1.1.a` + +## 2020-03-06 edition. + +- combinator-FQ version `1.0.a` added; diff --git a/combinator-FQ.py b/combinator-FQ.py index 7fe7383..37af24e 100755 --- a/combinator-FQ.py +++ b/combinator-FQ.py @@ -5,7 +5,7 @@ __version__: str = '1.4.a' # Year, month, day -__last_update_date__: str = '2021-03-XX' +__last_update_date__: str = '2021-03-26' __min_python_version__: float = 3.6 # Check python interpreter version