combinator-FQ changelog

2023-06-16 edition

Now, contig multiplicity is calculated simply as cov_i / cov_1.
Now, LQ-coefficient is calculated with no regard to multiplicity of contigs.

Version change:

1.5.b -> 1.6.a

2022-06-17 edition

Added .fna, .fsa, and .fsa_nt to possible fasta extentions.

Version change:

1.5.a -> 1.5.b

2021-05-12 edition

combinator-FQ now can calculate expected genome length and multiplicity of contigs based on number of overlaps, if no coverage information is present in sequence headers.
Minor output formatting fixes.

Version changes:

1.4.a -> 1.5.a

2021-03-26 edition

performed total refactoring. Memory usage is reduced. Made some cosmetic fixes.
Moved combinator-FQ to the separate (this) repository from https://github.com/masikol/cager-misc.

Version changes:

1.3.f -> 1.4.a

2021-01-21 edition

bug fix (combinator used to ternimate in the end if it couldn't extract ordinal number of contig from contig's name);

Version changes:

1.3.e -> 1.3.f

2020-12-03 edition

-o option addded.

Version changes:

1.3.d -> 1.3.e

2020-10-08 edition

combinator-FQ now rounds coverage with 2 trailing digits.

Version changes:

1.3.c --> 1.3.d

2020-06-15 edition.

errorneous handling of SPADEs's NODE_1 with zero coverage fixed;

Version changes:

1.3.b --> 1.3.c

2020-04-24 edition.

compatibility with a5 improved;

Version changes:

1.3.a --> 1.3.b

2020-04-15 edition.

calculating of expected genome length is improved;

Version changes:

1.2.b --> 1.3.a;

2020-04-10 evening edition.

a5-compatibility bug fixed;

Version changes:

1.2.a --> 1.2.b

2020-04-10 edition.

calculating of expected genome length is embedded once again -- not considering contigs multiplicity;
fasta-GC-content is added;

Version changes:

1.1.c --> 1.2.a

2020-03-18 edition.

calculating of expected genome length is disabled because it's impossible to handle high-copy replicons properly;

Version changes:

1.1.b --> 1.1.c

2020-03-09 edition.

calculation of expected genome length fixed;

Version changes:

1.1.a --> 1.1.b

2020-03-07 edition.

output file separated into three: adjacent_contigs. full_matching_log and summary;
A5-coverage summary bug fixed;

Version changes:

1.0.a --> 1.1.a

2020-03-06 edition.

combinator-FQ version 1.0.a added;