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.travis.yml
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.travis.yml
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language: python
python:
- 3.8
env:
- MPI=openmpi
virtualenv:
system_site_packages: true
branches:
only:
- master
before_install:
# Use miniconda and conda packages to speed up dependency setup (principally
# borrowed from https://gist.github.com/dan-blanchard/7045057
# and https://github.com/Jorge-C/ordination/blob/master/.travis.yml
- pwd
- sudo apt-get update -qq
- sudo apt-get install -qq libatlas-dev libatlas-base-dev liblapack-dev gfortran lcov
- gem install coveralls-lcov
- test $MPI == openmpi && MPIPACKAGES='openmpi-bin openmpi-dev' || true
- sudo apt-get install -qq $MPIPACKAGES
- wget http://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -O miniconda.sh
- chmod +x miniconda.sh
- ./miniconda.sh -b -p $HOME/miniconda
- export PATH="$HOME/miniconda/bin:$PATH"
# Update conda itself
- hash -r
- conda config --set always_yes yes --set changeps1 no
- conda update conda
# Useful for debugging any issues with conda
- conda info -a
# matplotlib needs a DISPLAY
- "export DISPLAY=:99.0"
- "sh -e /etc/init.d/xvfb start"
install:
- conda create --yes -n pelenv python=$TRAVIS_PYTHON_VERSION nose pip cython numpy scipy matplotlib sqlalchemy networkx
- source activate pelenv
- pip install munkres hungarian pyro4 brewer2mpl coverage coveralls coveralls-merge mpi4py
# download and install pele
- pwd
- cd $HOME/build/smcantab
- git clone https://github.com/pele-python/pele.git
- cd pele
- python setup_with_cmake.py build_ext -i --fcompiler=gfortran
- export PYTHONPATH="$PWD:$PYTHONPATH"
# build and install PyCG_DESCENT
- cd ../PyCG_DESCENT
- python setup.py build
- python setup.py install
- cp .coveragerc $HOME
- pwd
script:
# avoid running in the checkout directory so nose finds built modules..
- cd $HOME
- nosetests -v --with-coverage PyCG_DESCENT