How do I get a PDB of the combined antigen/antibody complex from Smina? #29
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I was able to run an antibody/antigen docking with Smina using TRILL. I'm not sure if it outputs a PDB of the combined antigen-antibody in the best docking pose. Does it? If so, where can I find that? Thanks. |
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Hi Tony, sorry for the delay! I've been doing some refactoring of TRILL and doing some last-minute bug fixes for the preprint coming out. I would also like to apologize about the misinformation, I don't think smina is able to dock proteins to proteins properly, you should go ahead with using lightdock for now. I'm in the process of updating the documentation and hopefully adding a new method for protein-protein docking, but I would avoid using smina for this purpose. |
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Hi Tony, sorry for the delay! I've been doing some refactoring of TRILL and doing some last-minute bug fixes for the preprint coming out. I would also like to apologize about the misinformation, I don't think smina is able to dock proteins to proteins properly, you should go ahead with using lightdock for now. I'm in the process of updating the documentation and hopefully adding a new method for protein-protein docking, but I would avoid using smina for this purpose.