config_2D_test.json

{"index":  ["S1", "S2", "S3"],
"data_type": ["single", "paired", "paired"],
"analysis_type": ["classic", "classic", "classic"],
"material":["RNA","RNA","RNA"],
"species":["trichinella","trichinella","trichinella"],
"output_dir": ["samples_2D_test", "samples_2D_test", "samples_2D_test_new"],
"sample": ["SRR518926_shorter", "SRR609196_shorter", "SRR609197_shorter"],
"strands": ["", "_R1,_R2", "_1,_2"],
"RNA.fq.data1": ["/mnt/nfs/shared/999993-Bioda/scripts/martin/test/TS_data/SRR518926_shorter.fastq.gz", "/mnt/nfs/shared/999993-Bioda/scripts/martin/test/TS_data/SRR609196_shorter_R1.fastq.gz", "/mnt/nfs/shared/999993-Bioda/scripts/martin/test/TS_data/SRR609197_shorter_1.fastq.gz"],
"RNA.fq.data2": ["", "/mnt/nfs/shared/999993-Bioda/scripts/martin/test/TS_data/SRR609196_shorter_R2.fastq.gz", "/mnt/nfs/shared/999993-Bioda/scripts/martin/test/TS_data/SRR609197_shorter_2.fastq.gz"],
"genome": ["/mnt/nfs/shared/999993-Bioda/scripts/martin/test/Trichinella_spiralis.Tspiralis1.27.dna.genome.copy.fa.gz", "/mnt/nfs/shared/999993-Bioda/scripts/martin/test/Trichinella_spiralis.Tspiralis1.27.dna.genome.fasta.gz", "/mnt/nfs/shared/999993-Bioda/scripts/martin/test/Trichinella_spiralis.Tspiralis1.27.dna.genome.fasta.gz"],
"annotation": ["/mnt/nfs/shared/999993-Bioda/scripts/martin/test/Trichinella_spiralis.Tspiralis1.27.new.gtf.gz", "/mnt/nfs/shared/999993-Bioda/scripts/martin/test/Trichinella_spiralis.Tspiralis1.27.gff3", "/mnt/nfs/shared/999993-Bioda/scripts/martin/test/Trichinella_spiralis.Tspiralis1.27.gff3"],
"adapters": ["", "/mnt/nfs/shared/999993-Bioda/scripts/martin/test/adapters_merge.fa", ""],
}