From cee1b7a06999cf60c9208f79e24bbb2ba51312bc Mon Sep 17 00:00:00 2001 From: mark sorel <39169381+marksorel8@users.noreply.github.com> Date: Fri, 18 Sep 2020 13:34:11 -0700 Subject: [PATCH] Update README.md --- README.md | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 78de617..b2b968c 100644 --- a/README.md +++ b/README.md @@ -1,10 +1,11 @@ # Chinook-pinniped -This repository contains code and data used in the manuscript *Estimating population-specific predation effects on Chinook salmon via data integration* by Mark H. Sorel, Richard W. Zabel, Devin S. Johnson, A. MIchelle Wargo Rub, and Sarah J. Converse, which has been provisionally accepted for publication in the Journal of Applied Ecology. +This repository contains code and data used in the manuscript *Estimating population-specific predation effects on Chinook salmon via data integration* by Mark H. Sorel, Richard W. Zabel, Devin S. Johnson, A. Michelle Wargo Rub, and Sarah J. Converse, which has been provisionally accepted for publication in the Journal of Applied Ecology. -The main script for the analysis is `Chinook_sea_lion_mortality_analysis.R`. This script conducts the ananlysis but sources several other scripts contained within the "src" folder. Several packages are required to run this script, including "TMB" (Template Model builder), which requires RTools. [Download instruction here](https://github.com/kaskr/adcomp/wiki/Download). +The main script for the analysis is `Chinook_sea_lion_mortality_analysis.R`. This script conducts the ananlysis but sources several other scripts contained within the `src` folder. Several packages are required to run this script, including "TMB" (Template Model builder), which requires RTools. [Download instruction here](https://github.com/kaskr/adcomp/wiki/Download). The following files, which contian code for the anlaysis, can be found in the `src` folder. + `pop_surv_final.cpp` contains the Template Model Builder code for the HMM and the population-specfic migration timing. `data_processing.R` contains functions to process data for the analysis.