iOS files missing after mobile application update

[whydinkov]

There is a problem that have been introduced in the past several versions (since 0.18). The fix
you have done for cache.localUrl caused me some problems (This is the code line 258 from cordova-app-loader-complete.js):

 if(changes > 0){
              // Save the new Manifest
              self.newManifest = newManifest;
              self.newManifest.root = self.cache.localUrl;
              resolve(true);
...

so when you set root property of new manifest with localUrl not with localInternalURL application could not find files when updated. On the following scenario:

1. install application
2. use autoupdate some time
3. release and install new mobile version
   application hangs. I think It's because localStorage is not cleaned and it tries to find application files in wrong directory (localUrl). If it's set with localInternalURL localStorage is also not cleaned but this time path I think is more generic and application finds the right files. So i suggest that's better to take it back to self.cache.localInternalURL. (localUrl searches in files:///..... while localInternalURL searches in cdvfile:///)