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Running mitohifi using singularity #80

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aureliendejode opened this issue Mar 6, 2024 · 1 comment
Open

Running mitohifi using singularity #80

aureliendejode opened this issue Mar 6, 2024 · 1 comment

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@aureliendejode
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Hello,

My cluster does not have docker but has singularity, so I am trying to use the singularity cmd:

singularity exec --bind /path/to/container_directory:/path/to/container_directory docker://ghcr.io/marcelauliano/mitohifi:master mitohifi.py -h

I am not familiar with singularity either so I am not sure what to put for the -bind option.
--bind /path/to/container_directory:/path/to/container_directory ?

Do I need to download so image first ?

Thanks for your help

@aabaricalla
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Did you try

singularity build mitohifi.sif docker://ghcr.io/marcelauliano/mitohifi:master 

??
Then use

singularity shell -e mitohifi.sif mitohifi [opts] [files] 

Or

singularity exec mitohifi.sif mitohifi [opts] [files] 

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