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Contig "+ contig_id + " does not have an annotation file #103

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FallonMe opened this issue Sep 20, 2024 · 0 comments
Open

Contig "+ contig_id + " does not have an annotation file #103

FallonMe opened this issue Sep 20, 2024 · 0 comments

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@FallonMe
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/opt/MitoHiFi/src/parallel_annotation.py:69: UserWarning: Contig atg000001l does not have an annotation file, check MitoFinder's log
warnings.warn("Contig "+ contig_id + " does not have an annotation file, check MitoFinder's log")
/opt/MitoHiFi/src/parallel_annotation.py:69: UserWarning: Contig atg000005l does not have an annotation file, check MitoFinder's log
warnings.warn("Contig "+ contig_id + " does not have an annotation file, check MitoFinder's log")
/opt/MitoHiFi/src/parallel_annotation.py:69: UserWarning: Contig ptg000002l does not have an annotation file, check MitoFinder's log
warnings.warn("Contig "+ contig_id + " does not have an annotation file, check MitoFinder's log")
/opt/MitoHiFi/src/parallel_annotation.py:69: UserWarning: Contig atg000003l does not have an annotation file, check MitoFinder's log
warnings.warn("Contig "+ contig_id + " does not have an annotation file, check MitoFinder's log")
/opt/MitoHiFi/src/parallel_annotation.py:69: UserWarning: Contig atg000004l does not have an annotation file, check MitoFinder's log
warnings.warn("Contig "+ contig_id + " does not have an annotation file, check MitoFinder's log")
/opt/MitoHiFi/src/parallel_annotation.py:69: UserWarning: Contig atg000006l does not have an annotation file, check MitoFinder's log
warnings.warn("Contig "+ contig_id + " does not have an annotation file, check MitoFinder's log")
/opt/MitoHiFi/src/parallel_annotation.py:69: UserWarning: Contig atg000007l does not have an annotation file, check MitoFinder's log
warnings.warn("Contig "+ contig_id + " does not have an annotation file, check MitoFinder's log")
/opt/MitoHiFi/src/parallel_annotation.py:69: UserWarning: Contig atg000002l does not have an annotation file, check MitoFinder's log
warnings.warn("Contig "+ contig_id + " does not have an annotation file, check MitoFinder's log")
/opt/MitoHiFi/src/parallel_annotation.py:69: UserWarning: Contig ptg000001c does not have an annotation file, check MitoFinder's log
warnings.warn("Contig "+ contig_id + " does not have an annotation file, check MitoFinder's log")
Traceback (most recent call last):
File "/opt/MitoHiFi/src/mitohifi.py", line 566, in
main()
File "/opt/MitoHiFi/src/mitohifi.py", line 303, in main
tRNA_ref = fetch.get_ref_tRNA()
File "/opt/MitoHiFi/src/fetch.py", line 48, in get_ref_tRNA
reference_tRNA = max(tRNAs, key=tRNAs.get)
ValueError: max() arg is an empty sequence

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