From 74f78edf9ffaf15768d6f2d09f7322fd90583fca Mon Sep 17 00:00:00 2001 From: Marcela Uliano-Silva Date: Tue, 12 Apr 2022 14:32:08 +0100 Subject: [PATCH] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 4e23219..0eba679 100644 --- a/README.md +++ b/README.md @@ -156,7 +156,7 @@ Using the species in our test data as an example, you would do: ``` findMitoReference.py --species "Phalera bucephala" --email your@email.for.ncbi.db.query --outfolder /data/ --min_length 16000 ``` -This command will give you NC_016067.1.fasta and NC_016067.1.gb that you can be used for flags **-f** and **-g** in the main pipeline. +This command will give you NC_016067.1.fasta and NC_016067.1.gb that you can uese for flags **-f** and **-g** in the main pipeline. 2-) Now, you need to decide if you want to run MitoHiFi v2.2 from: (i) raw reads, in which case the pipeline will map the reads (flag **-r**) to the reference genome of the closely-related species to pull out mito-reads and exclude possible NUMTS and then assemble them using Hifiasm, or